View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_82 (Length: 228)
Name: NF8241_low_82
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_82 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 13660596 - 13660368
Alignment:
| Q |
1 |
gagcatgtaaaatacttgggttgcatatgcaagaaatctgaggaacccataccagagtaatctaaggtggcaacaacctcacccaatttagctgggttat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13660596 |
gagcatgtaaaatacttgggttgcatatgcaagaaatctgaggaatccataccagagtaatctaaggtggcaacaacctcacccaatttagctgggttat |
13660497 |
T |
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| Q |
101 |
catgacgaacttgaggatacaaggtaaaacatatcctctaaataccttgtattctct-aaactcttttttattgactcaaa-cactactaaaatgattga |
198 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||| |
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| T |
13660496 |
catgacgaacttgaggatacaaggtaaagcatatcctctaaataccttgtattctctaaaactctttttgattgactcaaatcactattaaaatgattga |
13660397 |
T |
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| Q |
199 |
aaaacatactgaaaataacgtaagctaaca |
228 |
Q |
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| T |
13660396 |
aaaacatact-aaaataacgtaagataaca |
13660368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 21546515 - 21546582
Alignment:
| Q |
156 |
ctaaactcttttttattgactcaaa-cactactaaaatgattgaaaaacatactgaaaataacgtaag |
222 |
Q |
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| T |
21546515 |
ctaaactcctctttattgactcaactcactactaaaatgactgaaaaacttactgaaaataacgtaag |
21546582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 44192440 - 44192375
Alignment:
| Q |
158 |
aaactcttttttattgactcaaaca-ctactaaaatgattgaaaaacatactgaaaataacgtaag |
222 |
Q |
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| T |
44192440 |
aaactcttctttattgactcaaattgctaataaaatgattgaaaaacatgctgaaaataacgtaag |
44192375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 12865252 - 12865293
Alignment:
| Q |
181 |
cactactaaaatgattgaaaaacatactgaaaataacgtaag |
222 |
Q |
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| T |
12865252 |
cactactaaaatgattgaaaaatatgctgaaaataacgtaag |
12865293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 18631881 - 18631825
Alignment:
| Q |
167 |
tttattgactcaaa-cactactaaaatgattgaaaaacatactgaaaataacgtaag |
222 |
Q |
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|||||||||||||| |||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
18631881 |
tttattgactcaaatcactactagaatgacagaaaaacatgctgaaaataacgtaag |
18631825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 22296770 - 22296730
Alignment:
| Q |
181 |
cactactaaaatgattgaaaaacatactgaaaataacgtaa |
221 |
Q |
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|||||||||||||| || ||||||||||||||||||||||| |
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| T |
22296770 |
cactactaaaatgactggaaaacatactgaaaataacgtaa |
22296730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 12215557 - 12215492
Alignment:
| Q |
158 |
aaactcttttttattgactcaaa-cactactaaaatgattgaaaaacatactgaaaataacgtaag |
222 |
Q |
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|||||| | |||||||||||||| | |||||||||||||| |||||||||| |||||||| |||| |
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| T |
12215557 |
aaactcctctttattgactcaaatctatactaaaatgattgtaaaacatacttaaaataacataag |
12215492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 24469847 - 24469881
Alignment:
| Q |
188 |
aaaatgattgaaaaacatactgaaaataacgtaag |
222 |
Q |
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| T |
24469847 |
aaaatgattgaaaaacatactaaaaataacgtaag |
24469881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 32198714 - 32198779
Alignment:
| Q |
158 |
aaactcttttttattgactcaaa-cactactaaaatgattgaaaaacatactgaaaataacgtaag |
222 |
Q |
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|||||||||| |||||||| ||| ||| |||||||||| ||||||| || ||||||||||| |||| |
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| T |
32198714 |
aaactcttttgtattgacttaaatcaccactaaaatgaatgaaaaatatgctgaaaataacataag |
32198779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 14968478 - 14968438
Alignment:
| Q |
182 |
actactaaaatgattgaaaaacatactgaaaataacgtaag |
222 |
Q |
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|||| |||||||| |||||||||| |||||||||||||||| |
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| T |
14968478 |
actattaaaatgactgaaaaacatgctgaaaataacgtaag |
14968438 |
T |
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