View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_low_9 (Length: 501)
Name: NF8241_low_9
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 41359127 - 41358653
Alignment:
| Q |
1 |
caacaggtactcttttgactattatattcatatgttagtttttggaattttcctcatgaattttcattgtattcatgnnnnnnnnn--atacaatggatt |
98 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
41359127 |
caacaggtactcttttgactattatattcatatattagtttttggaattttc-------------attgtattcatgtttttttttttatacaatggatt |
41359041 |
T |
|
| Q |
99 |
tgatgttagaatgaggggtggccactgggtttacagccactgcatgcaaggatggagattgttagtaattggaacaactctggatcaatgtcatttaaca |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41359040 |
tgatgttagaatgaggggtggccactgggtttacagccactgcatgcaaggatggagattgttagtaatgggaacaactctggatcaatgtcatttaaca |
41358941 |
T |
|
| Q |
199 |
ccttgctcagtg---attctccttctacaaattcttcatctgatttagacacacaggttagtaaaactaaaattaacaaatattataggtactctgttgg |
295 |
Q |
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||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41358940 |
ccttgcttagtggttcttcttcttctacaaattcttcatctgatttagacacacaggttagtaaaactaaaattaacaaatattataggtactctgttgg |
41358841 |
T |
|
| Q |
296 |
attatactactctatatatatttgtttnnnnnnnnnnttgatacggaactcaaaaaatttctcaagtcatggaactcacatttaattcataagaaatata |
395 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
41358840 |
attatactactctatatatatttgttt-taaaaaaaattgatacggaactcaaaaaatttctcaagtcatggaaatcgcatttaattcataagaaatata |
41358742 |
T |
|
| Q |
396 |
caagctttaggaaactatttatgaatgaactcggatattagatagagaggtaatttatatactcaatatcgaaagttttggttaaagat |
484 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
41358741 |
catgctttaggaaactatttatgaatgaactcggatattagatagagaggtaatctatatactcaatatcgaaggttttggttaaagat |
41358653 |
T |
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