View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8242_high_1 (Length: 627)
Name: NF8242_high_1
Description: NF8242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8242_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 9 - 611
Target Start/End: Original strand, 38919569 - 38920171
Alignment:
| Q |
9 |
gagtgagaagaatgagtgcaagaggtgttgtagtggtgagtgccatgttggtaagttagtgaaggagaattaagatttgaagatgaggtttggtgagtat |
108 |
Q |
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| T |
38919569 |
gagtgagaagaatgagtgcaagaggtgttgtagtggtgagtgccatgttggtaagttagtgaaggagaattaagatttgaagatgaggtttggtgagtat |
38919668 |
T |
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| Q |
109 |
gtggagaggtggagaggggttttatttggagaggaatattattaataaggtaatttggttgagaatttgttggcatgagctggatcaaggctagcatata |
208 |
Q |
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| T |
38919669 |
gtggagaggtggagaggggttttatttggagaggaatattattaataaggtaatttggttgagaatttgttggcatgagctggatcaaggctagcatata |
38919768 |
T |
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| Q |
209 |
tcaatatattcccttagttgacaaatgaatacaaaaataaatcacatcaaagttgcaataaggaatgaagtttaacatttggttggaatgataagaaatt |
308 |
Q |
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| T |
38919769 |
tcaatatattcccttagttgacaaatgaatacaaaaataaatcacatcaaagttgcaataaggaatgaagtttaacatttggttggaatgataagaaatt |
38919868 |
T |
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| Q |
309 |
acatgttgtgttatatatgcaagtttgcaaaaagtcaagcctaatttgttttggtaggttgcattatatggaaattctttagagtggatcaaatacagac |
408 |
Q |
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| T |
38919869 |
acatgttgtgttatatatgcaagtttgcaaaaagtcaagcctaatttgttttggtaggttgcattatatggaaattctttagagtggatcaaatacagac |
38919968 |
T |
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| Q |
409 |
cctagtttgctgtaaaaggaatgagatacttcttatactgattaaccattgttttatgttcattaaaagaaagtgtttcttccacccacttcttaccatg |
508 |
Q |
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| T |
38919969 |
cctagtttgctgtaaaaggaatgagatacttcttatactgattaaccattgttttatgttcattaaaagaaagtgtttcttccacccacttcttaccatg |
38920068 |
T |
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| Q |
509 |
tgctctgttttgggcgtacaagacgcacaatcaaactcgcggaaaaaatgggaaaaatacaaaggatgccgcatatatacggaacatcaaacacccaaag |
608 |
Q |
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| T |
38920069 |
tgctctgttttgggcgtacaagacgcacaatcaaactcgcggaaaaaatgggaaaaatacaaaggatgccgcatatatacggaacatcaaacacccaaag |
38920168 |
T |
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| Q |
609 |
aag |
611 |
Q |
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| T |
38920169 |
aag |
38920171 |
T |
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