View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8242_high_17 (Length: 237)
Name: NF8242_high_17
Description: NF8242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8242_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26693768 - 26693546
Alignment:
| Q |
1 |
caggaagacacacacactttcttccggtttttggattgttaatggaatagctattcggtccacaaattccatgtatttttaaaggttgttggtggaattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26693768 |
caggaagacacacacactttcttccggtttttggattgttaatggaatagctattcggtccacaaattccatgtatttttaaaggttgttggtggaattg |
26693669 |
T |
|
| Q |
101 |
ccctgaaatcaaccacttctcttgcccatgttttcgactataagcacgaacattaccatcaaaatcaagagtcaatcttcgttggagaactgtcccataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26693668 |
ccctgaaatcaaccacttctcttgcccatgttttcgactataagcacgaacattaccatcaaaatcaagagtcaatcttcgttggagaactgtcccataa |
26693569 |
T |
|
| Q |
201 |
tcacttgtctttaaagtgaaatc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
26693568 |
tcacttgtctttaaagtgaaatc |
26693546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 26676476 - 26676690
Alignment:
| Q |
3 |
ggaagacacacacactttcttccggtttttggattgttaatggaatagctattcggtccacaaattccatgtatttttaaaggttgttggtggaattgcc |
102 |
Q |
| |
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|||| ||||| ||||||||| || ||| ||||||| |||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26676476 |
ggaacacacaaacactttctaccagttcttggattattaatgcaaacactattaggtccacaaattccatgtattttgaaaggttgttggtggaattgcc |
26676575 |
T |
|
| Q |
103 |
ctgaaatcaaccacttctcttgcccatgttttcgactataagcacgaacattaccatcaaaatcaagagtcaatcttcgttggagaactgtcccataatc |
202 |
Q |
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| T |
26676576 |
ctgaaatcgaccacttctcttgtccatgttttcgactataagaacgaacgttaccatcaaaatcaatggtcaatcttcgttggagcgatgtcccataatc |
26676675 |
T |
|
| Q |
203 |
acttgtctttaaagt |
217 |
Q |
| |
|
||||||||||||||| |
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| T |
26676676 |
acttgtctttaaagt |
26676690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 35 - 223
Target Start/End: Complemental strand, 26689582 - 26689394
Alignment:
| Q |
35 |
attgttaatggaatagctattcggtccacaaattccatgtatttttaaaggttgttggtggaattgccctgaaatcaaccacttctcttgcccatgtttt |
134 |
Q |
| |
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|||||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| || |||||| |
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| T |
26689582 |
attgttaatgcaaaagctattaggtccacaaattccatgtattttgaaaggttgttggtggaattgtcctgaaattgaccacttctcttgtccgtgtttt |
26689483 |
T |
|
| Q |
135 |
cgactataagcacgaacattaccatcaaaatcaagagtcaatcttcgttggagaactgtcccataatcacttgtctttaaagtgaaatc |
223 |
Q |
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|| |||||| ||||||||||||||||||| || | |||||||||||| |||| |||| ||||||||| |||||||||||||| ||||| |
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| T |
26689482 |
cggctataaacacgaacattaccatcaaagtctaaggtcaatcttcgtaggagcactgccccataatcgcttgtctttaaagtaaaatc |
26689394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 222
Target Start/End: Original strand, 26738112 - 26738277
Alignment:
| Q |
57 |
ggtccacaaattccatgtatttttaaaggttgttggtggaattgccctgaaatcaaccacttctcttgcccatgttttcgactataagcacgaacattac |
156 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| |||||||||||| | ||||||||||||||||| |||||||| |||||| |||||||||| | |
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| T |
26738112 |
ggtccacaaattccatgaatttgacaaggttgttggacgaattgccctgacactaaccacttctcttgcccttgttttcggctataaacacgaacattgc |
26738211 |
T |
|
| Q |
157 |
catcaaaatcaagagtcaatcttcgttggagaactgtcccataatcacttgtctttaaagtgaaat |
222 |
Q |
| |
|
||||||||||||| || | ||||||||| || ||||| |||||||||||||| | |||||||||| |
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|
| T |
26738212 |
catcaaaatcaagtgtaagtcttcgttgtagcactgttccataatcacttgttatgaaagtgaaat |
26738277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 26699720 - 26699892
Alignment:
| Q |
50 |
gctattcggtccacaaattccatgtatttttaaaggttgttggtggaattgccctgaaatcaaccacttctcttgcccatgttttcgactataagcacga |
149 |
Q |
| |
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|||||| ||||||||||| |||||||||| ||||||| ||| |||||||||||| | |||| |||||||||||||||||||| |||||| | ||| |
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| T |
26699720 |
gctattaggtccacaaatcccatgtatttgacaaggttgctggaggaattgccctgttactgaccaattctcttgcccatgttttcggctataaactcga |
26699819 |
T |
|
| Q |
150 |
acattaccatcaaaatcaagagtcaatcttcgttggagaactgtcccataatcacttgtctttaaagtgaaat |
222 |
Q |
| |
|
||||||||||||| |||||| |||||||||| ||| || ||||| |||||||||||||| || |||||||||| |
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| T |
26699820 |
acattaccatcaatatcaagggtcaatcttctttgtaggactgttccataatcacttgttttgaaagtgaaat |
26699892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 57 - 223
Target Start/End: Original strand, 26714876 - 26715042
Alignment:
| Q |
57 |
ggtccacaaattccatgtatttttaaaggttgttggtggaattgccctgaaatcaaccacttctcttgcccatgttttcgactataagcacgaacattac |
156 |
Q |
| |
|
||||||||||||||||| |||| | ||||||||| |||||||||||| | ||||||||||||||||| |||||||| |||||| |||||||||| | |
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| T |
26714876 |
ggtccacaaattccatgaatttgacatggttgttggacgaattgccctgacactaaccacttctcttgcccttgttttcggctataaacacgaacattgc |
26714975 |
T |
|
| Q |
157 |
catcaaaatcaagagtcaatcttcgttggagaactgtcccataatcacttgtctttaaagtgaaatc |
223 |
Q |
| |
|
||||||||||||| || | ||||||||| || ||||| |||||||||||||| | ||||||||||| |
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| T |
26714976 |
catcaaaatcaagtgtaagtcttcgttgtagcactgttccataatcacttgttatgaaagtgaaatc |
26715042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 223
Target Start/End: Original strand, 26734875 - 26735047
Alignment:
| Q |
51 |
ctattcggtccacaaattccatgtatttttaaaggttgttggtggaattgccctgaaatcaaccacttctcttgcccatgttttcgactataagcacgaa |
150 |
Q |
| |
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||||| ||||||||||| || ||||||| ||||||| ||| |||||||||||| | |||| ||| |||||||||||||||| |||||| | |||| |
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| T |
26734875 |
ctattaggtccacaaatcccgtgtatttgacaaggttgctggaggaattgccctgttactgaccaattcacttgcccatgttttcggctataaactcgaa |
26734974 |
T |
|
| Q |
151 |
cattaccatcaaaatcaagagtcaatcttcgttggagaactgtcccataatcacttgtctttaaagtgaaatc |
223 |
Q |
| |
|
|||||||||||| |||||| |||||||||| ||| || ||||| ||||||||| |||| || ||||||||||| |
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|
| T |
26734975 |
cattaccatcaatatcaagggtcaatcttctttgtaggactgttccataatcagttgttttgaaagtgaaatc |
26735047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 26745202 - 26745295
Alignment:
| Q |
112 |
accacttctcttgcccatgttttcgactataagcacgaacattaccatcaaaatcaagagtcaatcttcgttggagaactgtcccataatcact |
205 |
Q |
| |
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||||||||||||| ||||||||||| |||||| ||||||| ||||||||| |||||| | ||| ||||||||||| | ||||||||| ||||| |
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| T |
26745202 |
accacttctcttgtccatgttttcggctataaacacgaacgttaccatcatgatcaagggacaaccttcgttggagtagtgtcccatagtcact |
26745295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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