View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8242_high_5 (Length: 427)
Name: NF8242_high_5
Description: NF8242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8242_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 35593129 - 35593358
Alignment:
| Q |
17 |
agaccaaacaaacataacaacaattgcaaatcaaacatgcataagcaatatcacaatcatcttctataaaaactactaaatatgtatagtgataaaatnn |
116 |
Q |
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| T |
35593129 |
agaccaaacacgcataacaacaattgcaaatcaaacatgcataagcaatatcacaatcatcttctataaaaactactaaatatgtatagtgataaaataa |
35593228 |
T |
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| Q |
117 |
nnnnnnnggacaatccaaaccagaatagcaaaacaagagaacacaaaatttgacaacccagtaaaaaagtacagagaacttgaagatgcataaagaaatg |
216 |
Q |
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| T |
35593229 |
aaaaaa-ggacaatccaaaccagaatagccaaacaagagaacacaaaatttgacaacccagtaaaaaagtacagagagcttgaagatgcataaagaaata |
35593327 |
T |
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| Q |
217 |
aaattttacagtaaaggaagcaactttagtt |
247 |
Q |
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| T |
35593328 |
aaattttacagtaaaggaagcaactttagtt |
35593358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 35593453 - 35593516
Alignment:
| Q |
341 |
ggtacagtacatgtatttattggaacaaaaagaaaactgaaagaagaaggaatggaatttgata |
404 |
Q |
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| T |
35593453 |
ggtacagtacatgtatttattggaacaaaaagaaaactgaaagaagaaggaatggaatttgata |
35593516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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