View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8242_high_6 (Length: 427)
Name: NF8242_high_6
Description: NF8242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8242_high_6 |
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| [»] scaffold1211 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Complemental strand, 26378282 - 26377877
Alignment:
| Q |
13 |
catcactctttgcttgtgaagcacagctctactaatcgacagatggccaatgaatgtgctttgcttgaccggatctctcacagttcccatcctggcagtg |
112 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
26378282 |
catctctctttgcttgtgaagcacagctctactgatcgacagatggccaatgaatgtgctttgcttgactggatcactcacagttcccatcctggcagtg |
26378183 |
T |
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| Q |
113 |
acaaccctgcaggaaacttacaaacattatatacagaacaatcacgcaatgcttaaattgcatcnnnnnnnttagagctatctaataatcacagatgttt |
212 |
Q |
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| T |
26378182 |
acaaccctgcaggaaacttacaaacattatatacagaacaatcacgcaatgcttaaattgcatcaaaaaaattagagctatctaataatcacagatgttt |
26378083 |
T |
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| Q |
213 |
catttctttccattgcaatagcagatggtgcatgactacatgctaaaggaagaatgaatatggtttgcattattcagcacttcccctatcatcaaccata |
312 |
Q |
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| T |
26378082 |
catttctttccattgcaatagcagatggtgcatgactacatgctaaaggaagaatgcatacggtttgcattattcagcacttcccctatcatcaaccata |
26377983 |
T |
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| Q |
313 |
aaatgtttcaaggctccacacttggtgcaaaatatttgtttctgttatttattttgttaaccaaattgtgaagaaatataaactgaagttactcaaccat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26377982 |
aaatgtttcaaggctccacacttggtgcaaaatatttgtttctgttatttattttgttaaccaaattgtgaagaaatataaactgaagttactcaaccat |
26377883 |
T |
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| Q |
413 |
tcttct |
418 |
Q |
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|||||| |
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| T |
26377882 |
tcttct |
26377877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 2175 - 2046
Alignment:
| Q |
13 |
catcactctttgcttgtgaagcacagctctactaatcgacagatggccaatgaatgtgctttgcttgaccggatctctcacagttcccatcctggcagtg |
112 |
Q |
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| T |
2175 |
catctctctttgcttgtgaagcgcagctctactaatcgacagatggcctgtgagtgtgctttgcttgagtggctctcttacttttcccttctcggcagtg |
2076 |
T |
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| Q |
113 |
acaaccctgcaggaaacttacaaacattat |
142 |
Q |
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| T |
2075 |
acaactctgcaggaaacttacaaacattat |
2046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 184 - 319
Target Start/End: Complemental strand, 1726 - 1592
Alignment:
| Q |
184 |
ttagagctatctaataatcacagatgtttcatttctttccattgcaatagcagatggtgcatgactacatgctaaaggaagaatgaatatggtttgcatt |
283 |
Q |
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|||||||||||||||| | ||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||| |||| ||||| |||||||| |
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| T |
1726 |
ttagagctatctaatatttccagatgtgtcatt-ctttccatttcaatagcagatggtacatgactacatgctaaaggcagaacccatatgatttgcatt |
1628 |
T |
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| Q |
284 |
attcagcacttcccctatcatcaaccataaaatgtt |
319 |
Q |
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| T |
1627 |
attcaataattctcctatcatcaactatcaaatgtt |
1592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 411
Target Start/End: Complemental strand, 1558 - 1517
Alignment:
| Q |
370 |
taaccaaattgtgaagaaatataaactgaagttactcaacca |
411 |
Q |
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| T |
1558 |
taaccaaattgtgaagaaatataaactgaagttactcgacca |
1517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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