View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8242_high_9 (Length: 273)
Name: NF8242_high_9
Description: NF8242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8242_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 4664300 - 4664058
Alignment:
| Q |
14 |
agatgaataatatctccagcaaaggcagcatagttataatcattaccacctatctctcccaccacgaagagtgaccttttgaagtagctatcacaatctg |
113 |
Q |
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| T |
4664300 |
agatgagtaatatctccagcaaaggcagcatagttataatcattaccacctatctctcccaccacgaagagtgaccttttgaagtagctatcacaatctg |
4664201 |
T |
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| Q |
114 |
tgacatagcagaggattnnnnnnng--ttgttattggaaaatttcatacaatagtttcatttgggatggtcaatgaatgttatatgttaccttgtttagt |
211 |
Q |
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| T |
4664200 |
tgacatagcagaggattaaaaaaagttttgttattggaaaatttcatacaatggtttcatttgggatggtcaatgaatgttatatgttaccttgtttagt |
4664101 |
T |
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| Q |
212 |
tgtacaaaaggaaggtttcagcttcttaaaccagccaagctga |
254 |
Q |
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| T |
4664100 |
tgtacaaaaggaaggcttcagcttcttgaaccagccaagctga |
4664058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 4667740 - 4667505
Alignment:
| Q |
14 |
agatgaataatatctccagcaaaggcagcatagttataatcattaccacctatctctcccaccacgaagagtgaccttttgaagtagctatcacaatctg |
113 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
4667740 |
agatgagtaatatctccagcaaaggcagcatagttataatcattaccacctatctctcccaccacaaagagtggccttttgaagtagctatcacaatctg |
4667641 |
T |
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| Q |
114 |
tgacatagcagaggatt---nnnnnnngttgttattggaaaatttcatacaatagtttcatttgggatggtcaatgaatgttatatgttaccttgtttag |
210 |
Q |
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| T |
4667640 |
tgacatagcagaggattaaaaacaagttttgttattgg-aaatttcatacaatagtttcatttgggatggtcaatga---ctcaatgttaccttgtttag |
4667545 |
T |
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| Q |
211 |
ttgtacaaaaggaaggtttcagcttcttaaaccagccaag |
250 |
Q |
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| T |
4667544 |
ttgtgcacaaggaaggtttcagcttcttgaaccagccaag |
4667505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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