View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8242_low_10 (Length: 330)
Name: NF8242_low_10
Description: NF8242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8242_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 33251291 - 33251607
Alignment:
| Q |
16 |
caaatagtgattccaaaagagagggttcttgctacggtggatggtggggtccattgtttgggaattggaaaatcagaaagattgggtgcgggtggtaaca |
115 |
Q |
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| T |
33251291 |
caaatagtgattccaaaagagagggttcttgccacggtggatggtggggtccattgtttgggaatgggaagatcagaaagattgggtgcgggtggtaaca |
33251390 |
T |
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| Q |
116 |
ttattggcaacttccatcaacaaaatctatgggtagagtttgatcttgccaatcgtagagttggctttggtgaggctgattgtagcaaattggctaaata |
215 |
Q |
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| T |
33251391 |
ttattggcaacttccatcaacaaaatctatgggtagagtttgatcttgccaatcgtagagttggctttggtgaggctgattgtagcaaattggctaaata |
33251490 |
T |
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| Q |
216 |
aagcatcaaaagg---nnnnnnnnnnttcttatagttgagatatcgcagcagcattcacgaattgataaccgttgaattcagaccagacaatatattaaa |
312 |
Q |
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| T |
33251491 |
aagcatcaaaaggaaaagaaaaaaaattcatatagttgagatatggcagcagcattcacgaattgataatcgttgaattcagaccagataatatattaaa |
33251590 |
T |
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| Q |
313 |
tatgcgactaaactgtc |
329 |
Q |
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| T |
33251591 |
tacgcgactaaactgtc |
33251607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 33265392 - 33265593
Alignment:
| Q |
19 |
atagtgattccaaaagagagggttcttgctacggtggatggtggggtccattgtttgggaattggaaaatcagaaagattgggtgcgggtggtaacatta |
118 |
Q |
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| T |
33265392 |
atagtgattccgaaagagagagttctcattgaggtggacggtggagtccactgttttggaattggaagggcagaaggattgggtggagggggtaacatta |
33265491 |
T |
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| Q |
119 |
ttggcaacttccatcaacaaaatctatgggtagagtttgatcttgccaatcgtagagttggctttggtgaggctgattgtagcaaattggctaaataaag |
218 |
Q |
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| T |
33265492 |
ttggcaacttctatcaacaaaatttatgggtagagtttgatctggccaaacatagagttggtttccgtggggctaactgtagcaaatcagctaaatatag |
33265591 |
T |
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| Q |
219 |
ca |
220 |
Q |
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|| |
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| T |
33265592 |
ca |
33265593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 29396030 - 29396210
Alignment:
| Q |
22 |
gtgattccaaaagagagggttcttgctacggtggatggtggggtccattgtttgggaattggaaaatcagaaagattgggtgcgggtggtaacattattg |
121 |
Q |
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| T |
29396030 |
gtgattccaaaggaaagagtacttgctgacgtgggtggtggggtccactgtgttgggattggaagttcagataaattaggtgctgcaagtaatattattg |
29396129 |
T |
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| Q |
122 |
gcaacttccatcaacaaaatctatgggtagagtttgatcttgccaatcgtagagttggctttggtgaggctgattgtagca |
202 |
Q |
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| T |
29396130 |
gaaactttcatcaacaaaatctatgggtggaatttgatcttgtgaggcgtagggtggggtttggtaaggctgattgtagca |
29396210 |
T |
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