View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8242_low_18 (Length: 250)
Name: NF8242_low_18
Description: NF8242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8242_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 26693807 - 26694044
Alignment:
| Q |
1 |
tgtaaaccaagcttccaactttcatgcaacaacaaaacagaatcaaagactcgcttccaacgcttaccccatgttgatttttatggatacgattatttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26693807 |
tgtaaaccaagcttccaactttcatgcaacaacaaaacagaatcaaagactcgcttccaacgcttaccccatgttgatttttatggatacgattatttgc |
26693906 |
T |
|
| Q |
101 |
accaagcaaatttcacctataaacaatgtaagcagttctgcttgcgaatgtgtgaatgcatagccttccaatatcgtttggttaatgacgaaggtgtttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26693907 |
accaagcaaatttcacctataaacaatgtaagcagttctgcttgcgaatgtgtgaatgcatagccttccaatatcgtttggttaatgacgaaggtgtttt |
26694006 |
T |
|
| Q |
201 |
ttattgctatcctaagtcacaattgcgaaatgggttca |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26694007 |
ttattgctatcctaagtcacaattgcgaaatgggttca |
26694044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 26689658 - 26689886
Alignment:
| Q |
4 |
aaaccaagcttccaactttcatgcaacaacaaaacagaatcaaagactcgcttccaacgcttaccccatgttgatttttatggatacgattatttgcacc |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || | | ||||||| |||||||||||| | | |||| | ||||||||||||||| || ||| |
|
|
| T |
26689658 |
aaaccaagcttccaactttcatgcaacaataaaaccgagttagagactcgtttccaacgcttatcacgtgttcagttttatggatacgatgatgattacc |
26689757 |
T |
|
| Q |
104 |
aagcaaatttcacctataaacaatgtaagcagttctgcttgcgaatgtgtgaatgcatagccttccaatatcgtttggttaatgacgaaggtgtttttta |
203 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| || ||| || ||||||| |||||||||||||||| ||||||||| ||| ||||| | ||| |
|
|
| T |
26689758 |
aagcaaattacacttataaacaatgtaagcatttatgcatgagaatgtgccaatgcatagccttccagtatcgtttg------gacctgggtgtatctta |
26689851 |
T |
|
| Q |
204 |
ttgctatcctaagtcacaattgcgaaatgggttca |
238 |
Q |
| |
|
||||||||||||||||||||| | |||||| |||| |
|
|
| T |
26689852 |
ttgctatcctaagtcacaattacaaaatggattca |
26689886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 182
Target Start/End: Complemental strand, 26676432 - 26676254
Alignment:
| Q |
4 |
aaaccaagcttccaactttcatgcaacaacaaaacagaatcaaagactcgcttccaacgcttaccccatgttgatttttatggatacgattatttgcacc |
103 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||| | | | ||||| ||||||||| |||||||||||||| ||||||||||| |||||| | | |
|
|
| T |
26676432 |
aaaccaaacttccaactttcatgcaataacaaaacaaagttagagacttacttccaacgtttaccccatgttgagttttatggatatgattatcagttca |
26676333 |
T |
|
| Q |
104 |
aagcaaatttcacctataaacaatgtaagcagttctgcttgcgaatgtgtgaatgcatagccttccaatatcgtttggt |
182 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| |||||||| |||||||| |||| |||||||||||||||| ||||| |
|
|
| T |
26676332 |
aagcaaattacacttataaacaatgtaagcatttctgcttacgaatgtgccaatgtgtagccttccaatatcgcttggt |
26676254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 26745049 - 26744898
Alignment:
| Q |
4 |
aaaccaagcttccaactttcatgcaacaacaaaacagaatcaaagactcgcttccaacgcttaccccatgttgatttttatggatacgattatttgcac- |
102 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||| |||||||||||| | ||||||||||| ||||| | | || |
|
|
| T |
26745049 |
aaaccaagcttccaactttcatgtgacaacaagacaagttcaaatactcgcttccaacacttaccccatgtcaaattttatggatatgatta-tggtact |
26744951 |
T |
|
| Q |
103 |
caagcaaatttcacctataaacaatgtaagcagttctgcttgcgaatgtgtga |
155 |
Q |
| |
|
| ||||||| |||||||||||||||||||| || ||| ||||| ||||||| |
|
|
| T |
26744950 |
tacgcaaattatacctataaacaatgtaagcatttgtgcatgcgactgtgtga |
26744898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 26699531 - 26699467
Alignment:
| Q |
108 |
aaatttcacctataaacaatgtaagcagttctgcttgcgaatgtgtgaatgcatagccttccaat |
172 |
Q |
| |
|
||||| ||||||||||||||||||||| || || |||||| |||||||||||||||||||||||| |
|
|
| T |
26699531 |
aaattacacctataaacaatgtaagcatttgtgtttgcgattgtgtgaatgcatagccttccaat |
26699467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 26737916 - 26737852
Alignment:
| Q |
108 |
aaatttcacctataaacaatgtaagcagttctgcttgcgaatgtgtgaatgcatagccttccaat |
172 |
Q |
| |
|
||||| ||||||||||||||||||||| | ||||| | |||||||||||||||||||||||||| |
|
|
| T |
26737916 |
aaattacacctataaacaatgtaagcatatatgcttacaaatgtgtgaatgcatagccttccaat |
26737852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 26714680 - 26714616
Alignment:
| Q |
108 |
aaatttcacctataaacaatgtaagcagttctgcttgcgaatgtgtgaatgcatagccttccaat |
172 |
Q |
| |
|
||||| ||||||| ||||||||||||| | ||||| | |||||||||||||||||| ||||||| |
|
|
| T |
26714680 |
aaattacacctatgaacaatgtaagcatctatgcttacaaatgtgtgaatgcatagctttccaat |
26714616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University