View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8242_low_3 (Length: 443)
Name: NF8242_low_3
Description: NF8242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8242_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 41710960 - 41711385
Alignment:
| Q |
1 |
accaatcattaatggaatgagttgaaatgaagtatttggagaagacttctaaaagaaaattgatgtaccatattcaacnnnnnnn--cccgatgtttttg |
98 |
Q |
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| T |
41710960 |
accaaccattaatggaatgacttgaaatgaagtatttggagaagacttctaaaagaaaattgatgtaccatattcaacaaaaaaaaacccgatgtttttg |
41711059 |
T |
|
| Q |
99 |
gtctaattttaaacaaaatacatcaacttttgtttacaaaattgtctcttacaatataataagataagatgtagtattaaaagtgtaaccgatggattac |
198 |
Q |
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| T |
41711060 |
gtctaattttagacaaaatacatcaacttttgtttacaaaattgtctcttacaatataataagataagatgtagtattaaaagtgtaaccgatggattac |
41711159 |
T |
|
| Q |
199 |
gagaggtgtcccacatttacgtgtatgacacttcgaatatttttcaagtgtgaattgaattggatagacatttttcagtctttcgattccaatggaatta |
298 |
Q |
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| T |
41711160 |
gagaggtgtcccacatttacgtg----acacttcgaatatttttcaagtgtgaattgaattggatagacatttttcagtctttcgattccaatggaatta |
41711255 |
T |
|
| Q |
299 |
tcgacaaatcattttcaatgaaaacaaaagtattatcattagtcaccgttacataatgttatctcctctgtatggtcaccaagccaagaccattaaaact |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41711256 |
tcgacaaatcattttcaatgaaaacaaaagtattatcattagtccccgttacataatgttatctcctctgtatggtcaccaagccaagaccattaaaact |
41711355 |
T |
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| Q |
399 |
aaattttgcctcaaataggttgtgctatat |
428 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
41711356 |
aaattttgcctcaaataggttgtgctatat |
41711385 |
T |
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