View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8242_low_4 (Length: 432)
Name: NF8242_low_4
Description: NF8242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8242_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 432
Target Start/End: Original strand, 30867986 - 30868404
Alignment:
| Q |
16 |
gaaggtgcgaaacaatttttggctagtttggcatgctacaatttaggtcatttgacgtgctataaataataaggtgtttaataatatgtcaaaggaggtt |
115 |
Q |
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| T |
30867986 |
gaaggtgtgaaacaatttttggctagtttggcatgctacaatttgggtcatttgacgtgctataaataataaggtgtttaataatgtgtcaaaggaggtt |
30868085 |
T |
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| Q |
116 |
gatgatttggtggatgagattaaattgttatcttgaatttggaat------aggcttataaactccacatgcctttactatgaaatgaatggtgttggga |
209 |
Q |
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| T |
30868086 |
gatgatttgatggatgagattaagtttttatcttggatttggaatttacataggcttataaactccacatgcttttatt-----atgaatggtgttggga |
30868180 |
T |
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| Q |
210 |
tcctggaaattgcttattgagatagggtcgcaaggggagtgttagtggtacctggaggtgttgatcaataaaaaattcttccttctgttgcgnnnnnnng |
309 |
Q |
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| T |
30868181 |
tcctggaaattgcttattgagatagggtcgcaaggggagtgttagtggtacctggaggtgttgatcaataaaaaattcttccttctgttgcgtttttttg |
30868280 |
T |
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| Q |
310 |
agaaggttttgttacaattgaattttaataaaaatatcgttgatatatgaactggc-ttctattattaagaagaagaaaaaacttgttttcattcttgag |
408 |
Q |
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| T |
30868281 |
agaaggatttgttacaattgaattttaacaaaaatatcgttgatatatgaactggcattctattattaagaagaaaaaaaaacttgttttcattcttgag |
30868380 |
T |
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| Q |
409 |
ctatacggtgatggtgggtataac |
432 |
Q |
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| T |
30868381 |
ctttacggtgatggtgggtataac |
30868404 |
T |
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