View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8242_low_8 (Length: 381)
Name: NF8242_low_8
Description: NF8242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8242_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 23562497 - 23562859
Alignment:
| Q |
1 |
gagttatttcaaagagagaatagttataattgttgggacacgaggaaaattgtagattatcatgttggactttgaacatatacacaattaaatttgacgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23562497 |
gagttatttcaaagagagaatagttataattgttgggacacgaggaaaattgtagattatcatgttggactttgaacatatacacaattaaatttgacgt |
23562596 |
T |
|
| Q |
101 |
catattttaacctaaaatattaagacattaagtatatgagttcactctcatttatatagtgctcaacatccatattttcactgaatgtggaactctcact |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23562597 |
catattttaacccaaaatattaagacattaggtatatgagttccctctcatttatatagtgttaaacatccatatttccactgaatgtggaactctcact |
23562696 |
T |
|
| Q |
201 |
cacacttgatataataacaatcttcaccctcaagtgtgagttacccgttcatctgagtatactccccatcaaccggaagcttttcgagtcatacctactt |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
23562697 |
cacacttgatataataacaatcttcgccctcaagtttgagttatccgttcatctgagtatactccccatcaaccagaagcttttcgagtcatactgactt |
23562796 |
T |
|
| Q |
301 |
gcccccgtcgttgcttgcttcatcaacgagatgcactattatcaagaagactttagatacaag |
363 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23562797 |
ggccccgtcgttgcttgcttcatcaacgagatgcactattatcaagaagactttagatacaag |
23562859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University