View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8242_low_9 (Length: 334)
Name: NF8242_low_9
Description: NF8242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8242_low_9 |
 | |
|
| [»] scaffold0187 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0187 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 4079 - 4403
Alignment:
| Q |
1 |
tgaagcaattgaaaattgagaagaaacctgaagaagacttgttctgcctattaccatctcccatggtgattaatggctaagttttttgctagaagcgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4079 |
tgaagcaattgaaaattgagaagaaacctgaagaagacttgttctgcctattaccatctcccatggtgattaatggctaagttttttgctagaagcgatt |
4178 |
T |
|
| Q |
101 |
gtattgtttttcaaatgacaaggaaatatctcttatttatataaaatcataataatcaaggaggtttgaattgcatagtgtgaaattaagaatctgataa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4179 |
gtattgtttttcaaatgacaaggaaatatctcttatttatatacaatcataataatcaaggaggtttgaattgcatagtgtgaaattaagaatctgataa |
4278 |
T |
|
| Q |
201 |
agcagtggtaaagactaacataaatggttca----aatcatgctgagttggcagggtttcaacaactttctcaaggaacattttctgtggtccgagtccg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4279 |
agcagtggtaaagactaacataaatggttcaaattaatcatgctgagttggcagggtttcaacaactttctcaaggaacattttctgtggtccgagtccg |
4378 |
T |
|
| Q |
297 |
atagtttcgtacataagacaattct |
321 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
4379 |
atagtttcgtacataagacaattct |
4403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 13706 - 13425
Alignment:
| Q |
1 |
tgaagcaattgaaaattgagaagaaacctgaagaagacttgttctgcctattaccatctcccatggtgattaatggctaagttttttgctagaagcgatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
13706 |
tgaagcaattgaaaattgagaagaaacttgtggaagacttgttccgcctattaccacctcccatgatgattaatggctaagttttttgctagaagtgatt |
13607 |
T |
|
| Q |
101 |
gtattgtttttcaaatgacaaggaaatatctcttatttatataaaatcataataatcaaggaggtttgaattgcatagtgtgaaattaagaatctgataa |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
13606 |
gtcttgtttttcaaatgacaaggaaatatctcttatttatatacaatgatagtaatcgaggaggcttgaattgcat--tgtgaaattaagaatctaataa |
13509 |
T |
|
| Q |
201 |
agcagtggtaa--agactaacataaatggttcaaatcatgctgagttggcagggtttcaacaactttctcaaggaacattttct |
282 |
Q |
| |
|
|| |||||||| |||| || |||||||||||||||||||||||||||||||||| ||||||||| |||||| || |||||| |
|
|
| T |
13508 |
aggagtggtaattagaccaatgtaaatggttcaaatcatgctgagttggcagggttgtaacaactttgtcaaggcactttttct |
13425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 24034 - 23753
Alignment:
| Q |
1 |
tgaagcaattgaaaattgagaagaaacctgaagaagacttgttctgcctattaccatctcccatggtgattaatggctaagttttttgctagaagcgatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
24034 |
tgaagcaattgaaaattgagaagaaacttgtggaagacttgttccgcctattaccacctcccatgatgattaatggctaagttttttgctagaagtgatt |
23935 |
T |
|
| Q |
101 |
gtattgtttttcaaatgacaaggaaatatctcttatttatataaaatcataataatcaaggaggtttgaattgcatagtgtgaaattaagaatctgataa |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
23934 |
gtcttgtttttcaaatgacaaggaaatatctcttatttatatacaatgatagtaatcgaggaggcttgaattgcat--tgtgaaattaagaatctaataa |
23837 |
T |
|
| Q |
201 |
agcagtggtaa--agactaacataaatggttcaaatcatgctgagttggcagggtttcaacaactttctcaaggaacattttct |
282 |
Q |
| |
|
|| |||||||| |||| || |||||||||||||||||||||||||||||||||| ||||||||| |||||| || |||||| |
|
|
| T |
23836 |
aggagtggtaattagaccaatgtaaatggttcaaatcatgctgagttggcagggttgtaacaactttgtcaaggcactttttct |
23753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 37883797 - 37883507
Alignment:
| Q |
1 |
tgaagcaattgaaaattgagaagaaacctgaagaagacttgttctgcctattaccatctcccatggtgattaatggctaagttttttgctagaagcgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37883797 |
tgaagcaattgaaaattgagaagaaacctgaagaagacttgttctgcctattaccatctcccatggtgattaatggctaagttttttgctagaagcgatt |
37883698 |
T |
|
| Q |
101 |
gtattgtttttcaaatgacaaggaaatatctcttatttatataaaatcataataatcaaggaggtttgaattgcatagtgtgaaattaagaatctgataa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37883697 |
gtattgtttttcaaatgacaaggaaatatctcttatttatatacaatcataataatcaaggaggtttgaattgcatagtgtgaaattaagaatctgataa |
37883598 |
T |
|
| Q |
201 |
agcagtggtaaagactaacataaatggttcaaatcatgctga-gttggcagggtttcaacaactttctcaaggaacattttctgtggtccg |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| |||| || |||||||||||||| |
|
|
| T |
37883597 |
agcagtggtaaagactaacataaatggttcaaatcatgctgactttggcaaggttgtaacaactttcttaaggcactttttctgtggtccg |
37883507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 183 - 290
Target Start/End: Complemental strand, 37861756 - 37861650
Alignment:
| Q |
183 |
aaattaagaatctgataaagcagtggtaaagactaacataaatggttcaaatcatgctgagttggcagggtttcaacaactttctcaaggaacattttct |
282 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| | ||||||||| |
|
|
| T |
37861756 |
aaattaagaatctaataaaggagtggtaaagactaacctaaatggttcaaatcatgctgagttggcagggttgtaacaactttgtcaa-gcacattttct |
37861658 |
T |
|
| Q |
283 |
gtggtccg |
290 |
Q |
| |
|
|||||||| |
|
|
| T |
37861657 |
gtggtccg |
37861650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 37914533 - 37914455
Alignment:
| Q |
177 |
agtgtgaaattaagaatctgataaagcagtggtaaagactaacataaatggttcaaatcatgctgagttggcagggttt |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37914533 |
agtgtgaaattaagaatctgataaagcagtggtaaagactaacgtaaatggttcaaatcatgctgagttggcaaggttt |
37914455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 37870127 - 37870053
Alignment:
| Q |
1 |
tgaagcaattgaaaattgagaagaaacctgaagaagacttgttctgcctattaccatctcccatggtgattaatg |
75 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
37870127 |
tgaagcaactgaaaattgagaaaaaacctgaagaagacttgttctgcccattaccacctcccatgatgattaatg |
37870053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 177 - 290
Target Start/End: Complemental strand, 37869937 - 37869826
Alignment:
| Q |
177 |
agtgtgaaattaagaatctgataaagcagtggtaaagactaacataaatggttcaaatcatgctgagttggcagggtttcaacaactttctcaaggaaca |
276 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||| || |||||||||||||||| ||||| ||||||||||| ||||||||| | || | ||| |
|
|
| T |
37869937 |
agtgttaaattaagaatctg-taaagcagtggtaaagaccaatgtaaatggttcaaatcaagctgacttggcagggttgtaacaactttgtgaa-gcaca |
37869840 |
T |
|
| Q |
277 |
ttttctgtggtccg |
290 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
37869839 |
ttttctgtggtccg |
37869826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37861944 - 37861895
Alignment:
| Q |
1 |
tgaagcaattgaaaattgagaagaaacctgaagaagacttgttctgccta |
50 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37861944 |
tgaagcaactgaaaattgagaagaaacctgaagaagacttgttttgccta |
37861895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 37861836 - 37861775
Alignment:
| Q |
82 |
ttttttgctagaagcgattgtattgtttttcaaatgacaaggaaatatctcttatttatata |
143 |
Q |
| |
|
||||||||||||| |||||| ||| |||||||||||||| | ||||||||||||||||||| |
|
|
| T |
37861836 |
ttttttgctagaaatgattgtcttggttttcaaatgacaatgtaatatctcttatttatata |
37861775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 37914607 - 37914551
Alignment:
| Q |
85 |
tttgctagaagcgattgtattgtttttcaaatgacaaggaaatatctcttatttata |
141 |
Q |
| |
|
||||||||||| |||||| ||| |||| ||||||||||| ||||||||||||||||| |
|
|
| T |
37914607 |
tttgctagaagtgattgtcttggtttttaaatgacaaggtaatatctcttatttata |
37914551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 37870014 - 37869955
Alignment:
| Q |
82 |
ttttttgctagaagcgattgtattgtttttcaaatgacaaggaaatatctcttatttata |
141 |
Q |
| |
|
|||||||||||||| | |||| ||| |||| ||||||||| | ||||||||||||||||| |
|
|
| T |
37870014 |
ttttttgctagaagtggttgtcttggtttttaaatgacaatgtaatatctcttatttata |
37869955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 37914683 - 37914655
Alignment:
| Q |
12 |
aaaattgagaagaaacctgaagaagactt |
40 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37914683 |
aaaattgagaagaaacctgaagaagactt |
37914655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University