View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8243_high_4 (Length: 342)
Name: NF8243_high_4
Description: NF8243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8243_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 3 - 205
Target Start/End: Complemental strand, 43893894 - 43893690
Alignment:
| Q |
3 |
agaatgaaaaatcaggtattgccatgactagagtgtgaagaaactgcatatgtgcactttacgaagtcttcatgagagtatgagttgttcataattttga |
102 |
Q |
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| T |
43893894 |
agaatgaaaaatcaggtattgccatgactagagtgtaaagaaactgcatatgtgcactttacgaagtcttcatgagagtatgagttgttcataattttga |
43893795 |
T |
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| Q |
103 |
tttgatgtactgaatatttgaattaaa--gggtggatggtgaggagtattctagtttttgccttaatttctatgtatgtgagatttccttgttgcaggat |
200 |
Q |
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| T |
43893794 |
tttgatgtactgaatatttgaattaaagggggtggatggtgaggagtattctagtttttaccttaatttctatgtatgtgagatttccttgttgcaggat |
43893695 |
T |
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| Q |
201 |
gatga |
205 |
Q |
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||||| |
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| T |
43893694 |
gatga |
43893690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 186
Target Start/End: Complemental strand, 44294690 - 44294505
Alignment:
| Q |
3 |
agaatgaaaaatcaggtattgccatgactagagtgtgaagaaactgcatatgtgcactttacgaagtcttcatgagagtatgagttgttcataattttga |
102 |
Q |
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| T |
44294690 |
agaatgaaaaatcaggtattgccacaaccagagtgtgaagaaactgagtatgtgcactttatggagtcttcatgagagtgtgagatgttcataatttaga |
44294591 |
T |
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| Q |
103 |
tttgatgtactgaatatttgaattaa--agggtggatggtgaggagtattctagtttttgccttaatttctatgtatgtgagattt |
186 |
Q |
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| T |
44294590 |
tttgatgtactgaatatttgaattaaggagagtagatggtgaagagtattctagtttttacattaatttctatgtatgtgagattt |
44294505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 44304334 - 44304225
Alignment:
| Q |
1 |
ggagaatgaaaaatcaggtattgccatgactagagtgtgaagaaactgcatatgtgcactttacgaagtcttcatgagagtatgagttgttcataatttt |
100 |
Q |
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| T |
44304334 |
ggagaatgaaaaatcaggtattgccatgactagagtgtgaagaaactgcatatgtgcactttacgaagtcttcatgagagtatgagttgttcataatttt |
44304235 |
T |
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| Q |
101 |
gatttgatgt |
110 |
Q |
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|||||||||| |
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| T |
44304234 |
gatttgatgt |
44304225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 44303453 - 44303347
Alignment:
| Q |
106 |
gatgtactgaatatttgaattaaaggg--tggatggtgaggagtattctagtttttgccttaatttctatgtatgtgagatttccttgttgcaggatgat |
203 |
Q |
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|||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44303453 |
gatgtagtgaatatttgaattaaagggggtggattgtgaggagtattctagtttttgccttaatttctatgta--tgagatttccttgttgcaggatgat |
44303356 |
T |
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| Q |
204 |
gagttattt |
212 |
Q |
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||| ||||| |
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| T |
44303355 |
gagctattt |
44303347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 324
Target Start/End: Complemental strand, 43893552 - 43893412
Alignment:
| Q |
199 |
atgatgagttattttggtgttttggtactaacaggttggaactttttaattgcttattctcctaccatt---------------ggatcaaatgaaggag |
283 |
Q |
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| T |
43893552 |
atgatgagctattttggtgttttggtactaatgggttggaactttttaattgcttattctcctacctttgaaaaagtgcaataaggatcaaaagaaggac |
43893453 |
T |
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| Q |
284 |
ctaaggaacatatatcctaattaattgctactggtttgttg |
324 |
Q |
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| T |
43893452 |
ctaaggaacacatatcctaattagtggctactggtttgttg |
43893412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 324
Target Start/End: Complemental strand, 44303216 - 44303076
Alignment:
| Q |
199 |
atgatgagttattttggtgttttggtactaacaggttggaactttttaattgcttattctcctaccatt---------------ggatcaaatgaaggag |
283 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| |||||| |
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| T |
44303216 |
atgatgagctattttggtgttttggtactaatgggttggaactttttaattgcttattctcctacctttgaaaaagtgcaataaggatcaatagaaggac |
44303117 |
T |
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| Q |
284 |
ctaaggaacatatatcctaattaattgctactggtttgttg |
324 |
Q |
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| T |
44303116 |
ctaaggaacacatatcctaattagttgctactggtttgttg |
44303076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 44294379 - 44294316
Alignment:
| Q |
199 |
atgatgagttattttggtgttttggtactaacaggttggaactttttaattgcttattctcctac |
263 |
Q |
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||||| || ||||||||||||| |||||||| |||| | | ||||||||||||||||||| |||| |
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| T |
44294379 |
atgataagctattttggtgttt-ggtactaataggtcgtagctttttaattgcttattctactac |
44294316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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