View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8243_high_7 (Length: 252)
Name: NF8243_high_7
Description: NF8243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8243_high_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 49976936 - 49976694
Alignment:
| Q |
10 |
agagaagaaaaagagtaatgtatcatggtgnnnnnnnccatgacctagtctttcattttattttcatggtgcgctattgtgaaaataataaattnnnnnn |
109 |
Q |
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| T |
49976936 |
agagaagaaaaagagtaatgtatcatggtgaaaaaaaccatgacctagtctttcattttattttcatggtgcgctattgtgaaaataataaattaaaaaa |
49976837 |
T |
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| Q |
110 |
nnnnttatgttgttttggttatgtgatcactaatgaagaagaagatttaattaattaaataaattactgaattaccaggtggtggggaggtggtgtcagg |
209 |
Q |
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| T |
49976836 |
aaaattatgttgttttggttatgtgattactaatgaagaagaagatttaattaattaaataaattactgaattaccaggtggtggggaggtggtgtcaga |
49976737 |
T |
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| Q |
210 |
aagaagttgtttagcatggtgatctctactagagttgtcatca |
252 |
Q |
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| T |
49976736 |
aagaagttgtttagcatggtgatctctactagagttgtcatca |
49976694 |
T |
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