View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8243_low_1 (Length: 500)

Name: NF8243_low_1
Description: NF8243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8243_low_1
NF8243_low_1
[»] chr7 (3 HSPs)
chr7 (180-500)||(20065186-20065508)
chr7 (2-181)||(20065604-20065786)
chr7 (291-482)||(20301031-20301210)


Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 180 - 500
Target Start/End: Complemental strand, 20065508 - 20065186
Alignment:
Q  180 actgtatggaagcaaataagaaatcatggttgggaatttaagattagtgagaaaagaatcattttacaataatcaatttatactttatataattattgac 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20065508 actgtatggaagcaaataagaaatcatggttgggaatttaagattagtgagaaaagaatcattttacaataatcaatttatactttatataattattgac 20065409  T
Q  280 ttttagaaaggtactgataaactattttatgttaatatttaaaatttgaatgattcaaagttatagttttacaaaaaataaaacaactgatattatctta 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20065408 ttttagaaaggtactgataaactattttatgttaatatttaaaatttgaatgattcaaagttatagttttacaaaaaataaaacaactgatattatctta 20065309  T
Q  380 tcaattatgtgag--acacctgcctaaggcaagtttgaatacataaatgaaaaagacagtccaacttgatttcatgaaataaaaaacacagtcaagaaaa 477  Q
     ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20065308 acaattatgtgagacacacctgcctaaggcaagtttgaatacataaatgaaaaagacagtccaacttgatttcatgaaataaaaaatacagtcaagaaaa 20065209  T
Q  478 tgtctcaaacaaccattttttat 500  Q
    |||||||||||||||||||||||    
T  20065208 tgtctcaaacaaccattttttat 20065186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 20065786 - 20065604
Alignment:
Q  2 gatatgttatccatctcaagaacaaagttacgaattcatgcatatacattgataatgaactctccagtacttaaaattcaattattaatgga----tatt 97  Q
    |||| ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||    ||||    
T  20065786 gataggttatgcatctcaagaacaaagttacgtactcatgcatatacattgataatgaactctccagtacttaaaacttaattatta-tggaaacatatt 20065688  T
Q  98 agtaattttggacaatcaccttctgcttaaggtcaatactgacatgtcagttttgaacaaagctcatgttgaaaactgtcttac 181  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20065687 agtaattttggacaatcaccttctgctgaaggtcaatactgacatgtcagttttgaacaaagttcatgttgaaaactgtcttac 20065604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 291 - 482
Target Start/End: Original strand, 20301031 - 20301210
Alignment:
Q  291 tactgataaactattttatgttaatatt-taaaatttgaatgattcaaagttatagttttacaaaaaataaaacaactgatattatcttatcaattatgt 389  Q
    |||||||||||||||| |||||| || | |||||  ||||||||||||||||||||      ||| ||| | ||||||  ||||||||||||||||   |    
T  20301031 tactgataaactatttaatgttattagtctaaaaaatgaatgattcaaagttatag------aaagaattagacaacttttattatcttatcaatttcct 20301124  T
Q  390 gagacacctgcctaaggcaagtttgaatacataaatgaaaaagacagtccaacttgatttcatgaaataaaaaacacagtcaagaaaatgtct 482  Q
    |||||||       || ||| | |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||    
T  20301125 gagacac-------agtcaaatgtgaatacagaaatgaaaaagacagtccaagttgatttcatgaaataaaaaacacagtcagggaaatgtct 20301210  T

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