View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8243_low_2 (Length: 390)
Name: NF8243_low_2
Description: NF8243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8243_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 35352495 - 35352866
Alignment:
| Q |
1 |
aaataaagatgacgacaactctcaaacaaatgtggttagaactattaaattacagaggtgattgttaaaccagaattggtgatcggttctacttccccaa |
100 |
Q |
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| T |
35352495 |
aaataaagatgacgacaactctcaaacaaatgtggttagaactattaaattacagaggtgattgttaaaccagaattggtgatcggttctacttccccaa |
35352594 |
T |
|
| Q |
101 |
tacacatttgc-aagattgaggatattcgacaccttaaagactaatggcgtgtttggggatttcaagttaggaaatggtaacataatcgatgttgaagac |
199 |
Q |
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| T |
35352595 |
tgcacatttgccaagattgaggatattcgacaccttaaagactaatggcatgtttggggatttcaagttaggaaatggtaacataatcgatgttgaaggc |
35352694 |
T |
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| Q |
200 |
attgagagtgtgatactaaagttccacgatgctgcagttcatatgtcccaggatgcaaggttgttgatgccaacatcgtctctttggagagatgaaatca |
299 |
Q |
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| T |
35352695 |
attgagagtgtgatactaaagttccacgatgctgcagttcatatgtcccaggatgcaaggttgttgatgccaacatcgtctctttggagagatgaaatca |
35352794 |
T |
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| Q |
300 |
cttgagtagaagttcgatggtccaaagtcgctttgcaaggtgtatagtacataaggaagtgcatggtcctac |
371 |
Q |
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| T |
35352795 |
cttgagtagaagttcgatggtccaaagtcgctttgcaaggtgtatagtacataaggaagtgcatggtcctac |
35352866 |
T |
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