View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8243_low_6 (Length: 292)
Name: NF8243_low_6
Description: NF8243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8243_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 40144577 - 40144459
Alignment:
| Q |
1 |
agtgttcttttacaagaagaaagttcatgatgatgttgtttttggttagaactcatattgtggtgacaaagcaaagcacactatagttgcatttgtttgt |
100 |
Q |
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| T |
40144577 |
agtgttcttttacaagaagaaagttcatgatgatgttgtttttggttagaactcatattgtggtgacaaagcaaagcacactatagttgcatttgtttgt |
40144478 |
T |
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| Q |
101 |
ttaggaaccttatgagttg |
119 |
Q |
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||||||||||||||||||| |
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| T |
40144477 |
ttaggaaccttatgagttg |
40144459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 183 - 285
Target Start/End: Complemental strand, 40144415 - 40144313
Alignment:
| Q |
183 |
gataaagttgagcatttatgaaacaggttatgtggaatggagtttcttgaacactcccacctacttgtatttcctttttccactcaccccggactctctg |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40144415 |
gataaagttgagcatttatgaaacaggttatgtggaatggagtttcttgaacactcccacctacttgtatttcctttttccactcaccccggactctttg |
40144316 |
T |
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| Q |
283 |
ctt |
285 |
Q |
| |
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||| |
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| T |
40144315 |
ctt |
40144313 |
T |
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