View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8243_low_8 (Length: 281)
Name: NF8243_low_8
Description: NF8243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8243_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 30958594 - 30958858
Alignment:
| Q |
1 |
aacttctacaactgcggaagaatcaccaacatctcttatccgttctggggacaaaatcgtcattcgccatgtggtgctggtaaatcatttcatctttact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||| ||||| | ||| ||| |
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| T |
30958594 |
aacttctacaactgcggaagaatcaccaacatctcttatccgttctggggacaaaatcgtctttctccttgtggagctggtaaaccattttaccttaact |
30958693 |
T |
|
| Q |
101 |
gccataacaaccaaaatactaccattctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacaga |
200 |
Q |
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| | | || | | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| |
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| T |
30958694 |
gtaaggaaaataacatcactaccattctgttatcctcacaaaatttaacagtacttgacatcaacatagaaacacacaccatgaaactaaaaagaacaga |
30958793 |
T |
|
| Q |
201 |
ccttcatcaaaatctctgttctcctcaatatgatgatacttatttgtttccacctccgttccaac |
265 |
Q |
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|||| |||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
30958794 |
ccttgatcaaaatctttgttctcctcaatataattatacttatttgtttccacctccgttccaac |
30958858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 26 - 256
Target Start/End: Original strand, 31012427 - 31012657
Alignment:
| Q |
26 |
ccaacatctcttatccgttctggggacaaaatcgtcattcgccatgtggtgctggtaaatcatttcatctttactgccataacaaccaaaatactaccat |
125 |
Q |
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|||||||||||||||| ||||||||| ||||||||| || | ||||||||||| || | | ||| ||||||||||| || ||| || |||||||||| |
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| T |
31012427 |
ccaacatctcttatccattctggggagaaaatcgtccttttcattgtggtgctggcaacccgtatcacctttactgccacaataacaaagatactaccat |
31012526 |
T |
|
| Q |
126 |
tctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctctgttctcct |
225 |
Q |
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| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
31012527 |
tttgttatactcacaaaaattcacagtacttgacatcaacatagaaaaacacaccatgaaactcaaaagaacagaccttgatcaaaatctttgttctcct |
31012626 |
T |
|
| Q |
226 |
caatatgatgatacttatttgtttccacctc |
256 |
Q |
| |
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|||||| |||||||||||||||||||||||| |
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| T |
31012627 |
caatataatgatacttatttgtttccacctc |
31012657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 26 - 255
Target Start/End: Complemental strand, 15523394 - 15523165
Alignment:
| Q |
26 |
ccaacatctcttatccgttctggggacaaaatcgtcattcgccatgtggtgctggtaaatcatttcatctttactgccataacaaccaaaatactaccat |
125 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||| || | |||||| ||||| || | ||| | ||| ||||||| |||||| | | || ||||| |
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|
| T |
15523394 |
ccaacatctcttatccattttggggacaaaatcgtccttttcaatgtggggctggcaaccctttttaccttaactgccacaacaacaacaccaccaccat |
15523295 |
T |
|
| Q |
126 |
tctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctctgttctcct |
225 |
Q |
| |
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||| ||||| ||||||||||||||||||||||| || |||| || | |||| ||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
15523294 |
tctcttatcctcacaaaatttcacagtacttgatataaacagcaaagaccacatcatcaaactcaaaagaacagaccttgatcaaaatctatgttctcct |
15523195 |
T |
|
| Q |
226 |
caatatgatgatacttatttgtttccacct |
255 |
Q |
| |
|
||| | ||||||||||||||||||||||| |
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|
| T |
15523194 |
aaatttaatgatacttatttgtttccacct |
15523165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 117 - 255
Target Start/End: Original strand, 31001966 - 31002101
Alignment:
| Q |
117 |
tactaccattctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctc |
216 |
Q |
| |
|
||||||||||||| |||| |||||||||||||| |||||||| ||||||| | |||| |||||||| ||||| |||||||||||||| ||||||||| |
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| T |
31001966 |
tactaccattctgatatcctcacaaaatttcactgtacttgaaatcaacacaaaaaatcacaccatgaaacttaaaagaacagacct---tcaaaatctt |
31002062 |
T |
|
| Q |
217 |
tgttctcctcaatatgatgatacttatttgtttccacct |
255 |
Q |
| |
|
||||||||| | | || |||||||||||||||||||||| |
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| T |
31002063 |
tgttctcctaagtttgttgatacttatttgtttccacct |
31002101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 15493361 - 15493436
Alignment:
| Q |
181 |
atcaaactcaaaagaacagaccttcatcaaaatctctgttctcctcaatatgatgatacttatttgtttccacctc |
256 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||| | ||||||||||||||| |||||||| |
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| T |
15493361 |
atcaaactcaaaagaacagaccttgatcaaaatctatgttctcctcaatttcatgatacttatttgtctccacctc |
15493436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 136 - 241
Target Start/End: Complemental strand, 30664093 - 30663988
Alignment:
| Q |
136 |
tcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctctgttctcctcaatatgatg |
235 |
Q |
| |
|
||||||||||||| |||||| | || |||| | ||| |||| ||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| |
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| T |
30664093 |
tcacaaaatttcaacgtacttcaaataaacacaacaaatcacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaatttgatg |
30663994 |
T |
|
| Q |
236 |
atactt |
241 |
Q |
| |
|
|||||| |
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|
| T |
30663993 |
atactt |
30663988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 241
Target Start/End: Original strand, 31221752 - 31221876
Alignment:
| Q |
117 |
tactaccattctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctc |
216 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| || ||| | ||| |||||||||||||| || |||||||||||| |||||| | |
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| T |
31221752 |
tactaccattctattatcatcacaaaatttcacagtacttgatattaactcacaaattcacaccatcaaacttaagagaacagacctttcccaaaatttt |
31221851 |
T |
|
| Q |
217 |
tgttctcctcaatatgatgatactt |
241 |
Q |
| |
|
|||||||||||||| ||||||||| |
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|
| T |
31221852 |
tgttctcctcaatacaatgatactt |
31221876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 15493072 - 15493132
Alignment:
| Q |
1 |
aacttctacaactgcggaagaatcaccaacatctcttatccgttctggggacaaaatcgtc |
61 |
Q |
| |
|
|||| ||||||||| |||| ||| |||||||||||||||| ||||||||||||| ||||| |
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|
| T |
15493072 |
aactcctacaactgtggaaatatctccaacatctcttatccattctggggacaaagtcgtc |
15493132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 31001872 - 31001910
Alignment:
| Q |
23 |
tcaccaacatctcttatccgttctggggacaaaatcgtc |
61 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||| |
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|
| T |
31001872 |
tcaccaacatctcttatccattctggggaaaaaatcgtc |
31001910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 30943437 - 30943469
Alignment:
| Q |
102 |
ccataacaaccaaaatactaccattctgttatc |
134 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |
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|
| T |
30943437 |
ccataacaaccaaaacactaccattctgttatc |
30943469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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