View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8244_low_1 (Length: 257)
Name: NF8244_low_1
Description: NF8244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8244_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 31370079 - 31370269
Alignment:
| Q |
17 |
gagaagaaagggagttctatgtggttgtaactatatattctcattagcaataattatgtgaggttacattgcaatgggtacttcaccaaccnnnnnnnnc |
116 |
Q |
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| T |
31370079 |
gagaagaaagggagttctatgtggttgtaactatatattctcattagcaataattatgtgaggttacattgcaatgggtacttcaccaaccaaaaaaaac |
31370178 |
T |
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| Q |
117 |
caaagaaactaacggtccaaacaaagaaggaggttccagaactactcataatacatacaaggtccacccccgaccaccaccacctcccattt |
208 |
Q |
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| T |
31370179 |
caaagaaactaacggtccaaacaaagaaggaggttccagaactactcataatacatacaaggtcc-gccccgaccaccaccacctcccattt |
31370269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 31322736 - 31322884
Alignment:
| Q |
17 |
gagaagaaagggagttctatgtggttgtaactatatattctcattagcaataattatgtgaggttacattgcaatgggtacttcaccaacc------nnn |
110 |
Q |
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| T |
31322736 |
gagaagaaagggagttctatgtggttgtaactatatattctcattagcaataattatgtgaggttacattgcaatgggtacttcaccaaccaagcaaaaa |
31322835 |
T |
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| Q |
111 |
nnnnnccaaagaaactaacggtccaaacaaagaaggaggttccagaact |
159 |
Q |
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| T |
31322836 |
aaaacccaaagaaactaacggtccaaacaaagaaggaggttccagaact |
31322884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 11752927 - 11752976
Alignment:
| Q |
18 |
agaagaaagggagttctatgtggttgtaactatatattctcattagcaat |
67 |
Q |
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| T |
11752927 |
agaagaaagagagttctatgtgattgtaactatgaattttcattagcaat |
11752976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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