View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8245_high_11 (Length: 241)
Name: NF8245_high_11
Description: NF8245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8245_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 107 - 239
Target Start/End: Complemental strand, 11027028 - 11026896
Alignment:
| Q |
107 |
tataaattaagctcttgtagaattaaaccacttgcagtaaaagtttctttgtttattttattaactgagtgaaaattttacttgtgaactttttaatagt |
206 |
Q |
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| T |
11027028 |
tataaattaagctcttgtagaattaaaccacttgcagtaaaagtttctctgtttattttattaactgagtgaaaattttacttgtgaactttttaatagt |
11026929 |
T |
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| Q |
207 |
aaatacaaggactttttaatagtataatctagc |
239 |
Q |
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| T |
11026928 |
aaatacaaggactttttaatagtagaatttagc |
11026896 |
T |
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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 11033708 - 11033602
Alignment:
| Q |
1 |
aaagcagatgtgcaataaggataatattcttttctctaatagagtacttgaaaataacattaccaccttccgtgtgttttacttcaataaaagtggcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11033708 |
aaagcagatgtgcaataaggataatattcttttctcta--------cttgaaagtaacatcaccaccttccgtgtgttttacttcaataaaagtggcaat |
11033617 |
T |
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| Q |
101 |
gaagagtataaatta |
115 |
Q |
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| T |
11033616 |
gaagagtataaatta |
11033602 |
T |
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