View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8245_high_5 (Length: 399)

Name: NF8245_high_5
Description: NF8245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8245_high_5
NF8245_high_5
[»] chr7 (2 HSPs)
chr7 (218-384)||(32865205-32865371)
chr7 (32-142)||(32865018-32865129)
[»] chr5 (2 HSPs)
chr5 (218-384)||(35246841-35247007)
chr5 (11-142)||(35247071-35247203)
[»] chr2 (2 HSPs)
chr2 (218-384)||(42237194-42237360)
chr2 (11-138)||(42236986-42237114)
[»] chr3 (1 HSPs)
chr3 (286-384)||(21747255-21747353)
[»] chr6 (1 HSPs)
chr6 (273-386)||(20490639-20490752)
[»] chr1 (2 HSPs)
chr1 (226-333)||(27899710-27899816)
chr1 (20-138)||(27899894-27900013)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 218 - 384
Target Start/End: Original strand, 32865205 - 32865371
Alignment:
Q  218 gacgaacggcgacggaagaggagagaaacgtcggaaggagggttgccggaggaaaaaaggggagaacggtgatgcggccatgaaaggcatcgcaccacca 317  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32865205 gacgaacggcggcggaagaggagagaaacgtcggaaggagggtcgccggaggaaaaaaggggagaacggtaatgcggccatgaaaggcatcgcaccacca 32865304  T
Q  318 cagcaagcatctacatcgatgcggttgttgtttggatgtgaaggggaggagaggacggtgatgtagg 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32865305 cagcaagcatctacatcgatgcggttgttgtttggatgtgaaggggaggagaggacggtgatgtagg 32865371  T

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Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 32865018 - 32865129
Alignment:
Q  32 gaaagctattatgcgaaaaggcagaaca-acacaaaatatcccctaacctcaatctggcgtgaaggaagcaatttgatctctgtagccttcatatctgaa 130  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||    
T  32865018 gaaagctattatgcgaaaaggcagaacagacacaaaatatcccctaacctcaatccggcgtgaaggaagcaatttgatctctatagccttcagatctgaa 32865117  T
Q  131 ccaaatccgaag 142  Q
    ||||||||||||    
T  32865118 ccaaatccgaag 32865129  T

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Target: chr5 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 218 - 384
Target Start/End: Complemental strand, 35247007 - 35246841
Alignment:
Q  218 gacgaacggcgacggaagaggagagaaacgtcggaaggagggttgccggaggaaaaaaggggagaacggtgatgcggccatgaaaggcatcgcaccacca 317  Q
    ||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  35247007 gacgaacggcgacggaagaggagagaaacttcggaaggagggtcgctggaggaaaaaaggggagaacagtgatgcggccatgaaaggcatcacaccacca 35246908  T
Q  318 cagcaagcatctacatcgatgcggttgttgtttggatgtgaaggggaggagaggacggtgatgtagg 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35246907 cagcaagcatctacatcgatgcggttgttgtttggatgtgaaggggaggagaggagggtgatgtagg 35246841  T

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Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 35247203 - 35247071
Alignment:
Q  11 acagggcccgacaaccttggagaaagctattatgcgaaaaggcagaaca-acacaaaatatcccctaacctcaatctggcgtgaaggaagcaatttgatc 109  Q
    |||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  35247203 acagtgccggacaaccttggagaaagctattctgcgaaaaggcagaacagacacaaaacatcccctaacctcaatccggcgtgaaggaagcaatctgatc 35247104  T
Q  110 tctgtagccttcatatctgaaccaaatccgaag 142  Q
    ||| ||||||||| || ||||| ||||||||||    
T  35247103 tctatagccttcagatatgaactaaatccgaag 35247071  T

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Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 218 - 384
Target Start/End: Original strand, 42237194 - 42237360
Alignment:
Q  218 gacgaacggcgacggaagaggagagaaacgtcggaaggagggttgccggaggaaaaaaggggagaacggtgatgcggccatgaaaggcatcgcaccacca 317  Q
    |||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42237194 gacgaacgacgacggaagaggagagaaacgtcggaaggagggtcgtcggaggaaaaaaggggagaacggtgatgctgccatgaaaggcatcgcaccacca 42237293  T
Q  318 cagcaagcatctacatcgatgcggttgttgtttggatgtgaaggggaggagaggacggtgatgtagg 384  Q
    || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42237294 caacaagcatctacatctatgcggttgttgtttggatgtgaaggggaggagaggacggtgatgtagg 42237360  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 42236986 - 42237114
Alignment:
Q  11 acagggcccgacaaccttggagaaagctattatgcgaaaaggcagaacaa-cacaaaatatcccctaacctcaatctggcgtgaaggaagcaatttgatc 109  Q
    |||| ||| ||||||||||||||||| |||| |||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  42236986 acagtgccggacaaccttggagaaagatattctgcgaaaaggcagaacaaacacaaaacatcccctaacctcaatccggcgtgaaggaagcaatctgatc 42237085  T
Q  110 tctgtagccttcatatctgaaccaaatcc 138  Q
    ||||||||||||| |||||||||| ||||    
T  42237086 tctgtagccttcagatctgaaccatatcc 42237114  T

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Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 286 - 384
Target Start/End: Complemental strand, 21747353 - 21747255
Alignment:
Q  286 gtgatgcggccatgaaaggcatcgcaccaccacagcaagcatctacatcgatgcggttgttgtttggatgtgaaggggaggagaggacggtgatgtagg 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21747353 gtgatgcggccatgaaaggcatcgcaccaccacagcaagcatctacatcgatgtggttgttgtttggatgtgaaggggaggagaggacggtgatgtagg 21747255  T

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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 273 - 386
Target Start/End: Original strand, 20490639 - 20490752
Alignment:
Q  273 aaaggggagaacggtgatgcggccatgaaaggcatcgcaccaccacagcaagcatctacatcgatgcggttgttgtttggatgtgaaggggaggagagga 372  Q
    |||||||||||||||| ||| | |||||||| ||| ||||||  |||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||     
T  20490639 aaaggggagaacggtggtgcagtcatgaaagacattgcaccataacagcaagcatctacatcgatgcggtagttttttggatgtgaagaggaggtgaggt 20490738  T
Q  373 cggtgatgtaggtg 386  Q
     |||||||||||||    
T  20490739 tggtgatgtaggtg 20490752  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 226 - 333
Target Start/End: Complemental strand, 27899816 - 27899710
Alignment:
Q  226 gcgacggaagaggagagaaacgtcggaaggagggttgccggaggaaaaaaggggagaacggtgatgcggccatgaaaggcatcgcaccaccacagcaagc 325  Q
    |||||| ||||| ||||| |||||||| |||||||  |||||||||||  |||||||||||| ||||||||||||||||||||||||||||||| ||| |    
T  27899816 gcgacgaaagagaagagagacgtcggatggagggtctccggaggaaaag-ggggagaacggtaatgcggccatgaaaggcatcgcaccaccacaacaaac 27899718  T
Q  326 atctacat 333  Q
    ||||||||    
T  27899717 atctacat 27899710  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 27900013 - 27899894
Alignment:
Q  20 gacaaccttggagaaagctattatgcgaaaaggcagaaca-acacaaaatatcccctaacctcaatctggcgtgaaggaagcaatttgatctctgtagcc 118  Q
    ||||| ||||||||||||||||  ||||||||  | |||| |||||||| ||||||||||||||||| |||||||||| |||||| ||| |||| ||  |    
T  27900013 gacaaacttggagaaagctattccgcgaaaagaaataacagacacaaaacatcccctaacctcaatccggcgtgaaggtagcaatctgagctctataatc 27899914  T
Q  119 ttcatatctgaaccaaatcc 138  Q
    || | || ||||||||||||    
T  27899913 tttagatatgaaccaaatcc 27899894  T

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