View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8245_high_9 (Length: 274)
Name: NF8245_high_9
Description: NF8245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8245_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 129 - 258
Target Start/End: Complemental strand, 29416472 - 29416343
Alignment:
| Q |
129 |
tcatctgtttcttgtgcatctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtt |
228 |
Q |
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| T |
29416472 |
tcatctgtttcttgtgcatctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtt |
29416373 |
T |
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| Q |
229 |
tactgttctatcattttccaaccaatgtga |
258 |
Q |
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| T |
29416372 |
tactgttctatcattttccaaccaatgtga |
29416343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 24655861 - 24655971
Alignment:
| Q |
26 |
tttgtgtcattgagcaaggatgtttaattttacgtcattattagattatgttactgaggtagaatcaatgtactgatgcagagaatacaatggactgtta |
125 |
Q |
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| T |
24655861 |
tttgtgtcattgaactaggatgtttaattttacgtcattattggattatgttactgaggtagaatcaatgtactgatgcagagaatacaatggactgtta |
24655960 |
T |
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| Q |
126 |
atgtcatctgt |
136 |
Q |
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| T |
24655961 |
atgtcatctgt |
24655971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 24655955 - 24656048
Alignment:
| Q |
148 |
ctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtttactgttctatca |
241 |
Q |
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| T |
24655955 |
ctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaaggtttgattacagttctgtttttacttgtttactgttctatca |
24656048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 29416546 - 29416470
Alignment:
| Q |
16 |
tttctaactatttgtgtcattgagcaaggatgtttaattttacgtcattattagattatgttactgaggtagaatca |
92 |
Q |
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| T |
29416546 |
tttctaactatttgtgtcattgagcaaggatgtttaattttacgtcattattagattatgttactgaggtagaatca |
29416470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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