View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8245_low_1 (Length: 438)
Name: NF8245_low_1
Description: NF8245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8245_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 15 - 353
Target Start/End: Complemental strand, 18219604 - 18219267
Alignment:
| Q |
15 |
atctatatttatttgttcagagtgtaccatagagtatgaacagaactataagaaatcccattatgatattgtgtgatgttacttgttatagtttacttta |
114 |
Q |
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| T |
18219604 |
atctatatttattagtccagagtgtaccatagagtatgaacagaattataa-aaatcccattatgatattgtgtgatgttgcttgttatattttacttta |
18219506 |
T |
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| Q |
115 |
cattctcatccatctatgccaataaatgttgaagactgatgaaaatcaatactgtaattactgtctttcaagctaactgaaaaggattttgcttgccact |
214 |
Q |
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| T |
18219505 |
tattcccatccatctatccgaataaatgttgaagactgatgaaaatcaatactgtaattactggctttcaacctaaatgaaatgaatttttcttgccact |
18219406 |
T |
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| Q |
215 |
gatgaaaagcacttaatgcaggatcaaataggaatgctgaaaccaacactagtagaagaaccacaaatgtcagaatcattaacaccaccagcgttattgc |
314 |
Q |
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| T |
18219405 |
gatgaaatgcacttaatgtaggatcaaatgggaatgctgaaaccaacactagtagaagaaccacaaatgtcagaatcattaacaccaccagtgttattgc |
18219306 |
T |
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| Q |
315 |
taggaccaacatcattgacagaaagcattggacaagaga |
353 |
Q |
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| T |
18219305 |
ttggaccaacatcattgacagaaaacattggagaagaga |
18219267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 420
Target Start/End: Complemental strand, 18219273 - 18219215
Alignment:
| Q |
362 |
gaagagaaaggtaataatgtcnnnnnnncaaaatcagaagacacacaaatggtagtagg |
420 |
Q |
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| T |
18219273 |
gaagagaaaggtaataatgtcaaaaaaacaaaatcagcagacacacaaatggtagtagg |
18219215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 298 - 420
Target Start/End: Complemental strand, 43011226 - 43011104
Alignment:
| Q |
298 |
accaccagcgttattgctaggaccaacatcattgacagaaagcattggacaagagacaagggaggaagagaaaggtaataatgtcnnnnnnncaaaatca |
397 |
Q |
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| T |
43011226 |
accaccagcgtcattgcttggaccaacatcattgacagaaaacattggacatgagacaagggaggaagagaaaggtactaacgtgaacaaaacaaaatca |
43011127 |
T |
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| Q |
398 |
gaagacacacaaatggtagtagg |
420 |
Q |
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| T |
43011126 |
gcagacacacaaatggtagtagg |
43011104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 43011287 - 43011222
Alignment:
| Q |
213 |
ctgatgaaaagcacttaatgcaggatcaaataggaatgctgaaaccaacactagtagaagaaccac |
278 |
Q |
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| T |
43011287 |
ctgatgaaaagcacttaacgcaggatcaaatgggaatgctgaaaccaacactagtagaagaaccac |
43011222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 43011365 - 43011303
Alignment:
| Q |
106 |
tttactttacattctcatccatctatgccaataaatgttgaagactgatgaaaatcaatactg |
168 |
Q |
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| T |
43011365 |
tttactttatattctcatccatctatgcgaataaatgttgaagactgatgaaaatcaatactg |
43011303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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