View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8245_low_10 (Length: 282)
Name: NF8245_low_10
Description: NF8245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8245_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 172 - 267
Target Start/End: Original strand, 8236281 - 8236376
Alignment:
| Q |
172 |
ggtttcaaaaacggaaatggagtgcgttgttgaaacagcgttgaaaaccagtttaaggaaagatataactcctcaaacatttgttgatgaaatttc |
267 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8236281 |
ggtttcaaaaacggtaatggagtgcgttgttgaaacagcgttgaaaaccagtttaaggaaagacataactcctcaaacatttgttgatgaaatttc |
8236376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 8236120 - 8236212
Alignment:
| Q |
11 |
ctctctcgaccatatcaccacaaaaactttctctcttttctcatcttcctcatcctcactcacaggtataacactattcaaatatcaattatc |
103 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
8236120 |
ctctctcaaccatatcaccacaaaaactttctctcttttctcatcttcctcatcctcactcacaggtataacactattcacatatgaattatc |
8236212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University