View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8245_low_2 (Length: 417)
Name: NF8245_low_2
Description: NF8245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8245_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 4 - 405
Target Start/End: Original strand, 52244642 - 52245021
Alignment:
| Q |
4 |
acaatcttcaattttgaaaattcgtcgaatttctcaactggcaaaaatatcgtccaattgaacagcagtagtgaataataatgccccttagtcaactgct |
103 |
Q |
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| T |
52244642 |
acaatcttcaattttgaaaattcgtcgaatttctcaactggcaaaaatatcgtccaattgaacag----------------------ttagtcaactgct |
52244719 |
T |
|
| Q |
104 |
tgtgacttggcacattaagtggtctgtgcctactgcctgtcacattactatcatctcaggtggaccactttgcctgaaaattttatgaagttaaaatgat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52244720 |
tgtgacttggcacattaagtggtctgtgcctactgcctgtcacattactatcatctcaggtggaccactttgcctgaaaattttatgaagttaaaatgat |
52244819 |
T |
|
| Q |
204 |
taattttgtgacaattagcttgtgatctatgtttacataacgcgaccgttgaatccgattcattagaaagtgttataccagctggtggaagaatgtgcga |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52244820 |
taattttgtgacaattagcttgtgatctatgtttacataacgcgaccgttgaatccgattcattagaaagtgttataccagctggtggaagaatgtgtga |
52244919 |
T |
|
| Q |
304 |
ctataaaagctcaaaagtgtcccccatgtgttggttaactcatatattatgtgatttttaatatttcattcattacaattggtgacatttgaagaaaatg |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52244920 |
ctataaaagctcaaaagtgtcccccatgtgttggttaactcatatattatatgatttttaatatttcattcattacaattggtgacatttgaagaaaatg |
52245019 |
T |
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