View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8245_low_3 (Length: 414)
Name: NF8245_low_3
Description: NF8245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8245_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 12 - 399
Target Start/End: Original strand, 37233846 - 37234224
Alignment:
| Q |
12 |
atggacatcattgcagtttcaatatgcaatgaaacggacataaacatgacataaacatgaatgaacaattttctattccaatactaaactaacaacaaaa |
111 |
Q |
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| T |
37233846 |
atggacaacattgcagtttcaatatgcaatgaaaccgacataaacatga-----------atgaacaattttctattccaatagtaaactaacaacaaaa |
37233934 |
T |
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| Q |
112 |
--ttctaaagcagataagaaaaactaaccaggtgaacattttggagccaaagaaccaagaacatcctcaagtttaaagggcaaagcaggcaaaaaataaa |
209 |
Q |
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| T |
37233935 |
cattctaaagcagataagaaaaactaaccaggtgaacattttggagccaaagaaccaagaacatcctcaagtttaaagggcaaagcaggcaaaaaataaa |
37234034 |
T |
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| Q |
210 |
gaaacacaacatcaaaaggagaccatttttccggaacaatagtaacctctccttgccaacacttaatattatcatatttctcaataagaagagccaatat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37234035 |
gaaacacaacatcaaaaggagaccatttttccggaacaatagtaacctctccttgccaacacttaatattatcatatttctcaataagaagagccaatat |
37234134 |
T |
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| Q |
310 |
caaaagtgagtcatgaagaacaagcatagacttgaatttagaaccaccaactaaacaatccacaaactcttcagaaccacttgaaaccaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37234135 |
caaaagtgagtcatgaagaacaagcatagacttgaatttagaaccaccaactaaacaatccacaaactcttcagaaccacttgaaaccaa |
37234224 |
T |
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