View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8245_low_4 (Length: 404)
Name: NF8245_low_4
Description: NF8245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8245_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 26 - 258
Target Start/End: Original strand, 32956597 - 32956825
Alignment:
| Q |
26 |
tggagtagtgtatgagtaagggtcaaaatcgtaatgatcatgttgttggtagttagagtaaagcaaagagtaattagaatttgtttgaggatgaaacata |
125 |
Q |
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| T |
32956597 |
tggagtagtgtatgagtaagggtcaaaatcgcaatgatcatgttgttggtagttagagtaaatcaaagagtagttagaatttgtttgaggatgaaacata |
32956696 |
T |
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| Q |
126 |
ccacatgtgcatgttcctcccattatgtgaccttgttgagagctactacaacaatgatgcatcattggttggtgatgaatgagtgtgacaatattagtat |
225 |
Q |
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| T |
32956697 |
ccacatgtgcatgttcctcccattatgtgaccttgttgagagctactacaacaatgatgcatca----ttggtgatgaatgattgtgacaatattagtat |
32956792 |
T |
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| Q |
226 |
gttgcaatgttgtatgaaatggtttgaatttat |
258 |
Q |
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| T |
32956793 |
gttgcaatgttgtatgaaatggtttgaatttat |
32956825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 324 - 388
Target Start/End: Original strand, 32956891 - 32956955
Alignment:
| Q |
324 |
ttgattgggtagtcaaaagtgggcacgtgacagagggaacagtcttccaggatctgccttcttcg |
388 |
Q |
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| T |
32956891 |
ttgattgggtagtcaaaagtgggcacgtgacagagggaacagtcttccaggatctgccttcttcg |
32956955 |
T |
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