View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8245_low_6 (Length: 399)
Name: NF8245_low_6
Description: NF8245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8245_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 218 - 384
Target Start/End: Original strand, 32865205 - 32865371
Alignment:
| Q |
218 |
gacgaacggcgacggaagaggagagaaacgtcggaaggagggttgccggaggaaaaaaggggagaacggtgatgcggccatgaaaggcatcgcaccacca |
317 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32865205 |
gacgaacggcggcggaagaggagagaaacgtcggaaggagggtcgccggaggaaaaaaggggagaacggtaatgcggccatgaaaggcatcgcaccacca |
32865304 |
T |
|
| Q |
318 |
cagcaagcatctacatcgatgcggttgttgtttggatgtgaaggggaggagaggacggtgatgtagg |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32865305 |
cagcaagcatctacatcgatgcggttgttgtttggatgtgaaggggaggagaggacggtgatgtagg |
32865371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 32865018 - 32865129
Alignment:
| Q |
32 |
gaaagctattatgcgaaaaggcagaaca-acacaaaatatcccctaacctcaatctggcgtgaaggaagcaatttgatctctgtagccttcatatctgaa |
130 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
32865018 |
gaaagctattatgcgaaaaggcagaacagacacaaaatatcccctaacctcaatccggcgtgaaggaagcaatttgatctctatagccttcagatctgaa |
32865117 |
T |
|
| Q |
131 |
ccaaatccgaag |
142 |
Q |
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|||||||||||| |
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| T |
32865118 |
ccaaatccgaag |
32865129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 218 - 384
Target Start/End: Complemental strand, 35247007 - 35246841
Alignment:
| Q |
218 |
gacgaacggcgacggaagaggagagaaacgtcggaaggagggttgccggaggaaaaaaggggagaacggtgatgcggccatgaaaggcatcgcaccacca |
317 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
35247007 |
gacgaacggcgacggaagaggagagaaacttcggaaggagggtcgctggaggaaaaaaggggagaacagtgatgcggccatgaaaggcatcacaccacca |
35246908 |
T |
|
| Q |
318 |
cagcaagcatctacatcgatgcggttgttgtttggatgtgaaggggaggagaggacggtgatgtagg |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35246907 |
cagcaagcatctacatcgatgcggttgttgtttggatgtgaaggggaggagaggagggtgatgtagg |
35246841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 35247203 - 35247071
Alignment:
| Q |
11 |
acagggcccgacaaccttggagaaagctattatgcgaaaaggcagaaca-acacaaaatatcccctaacctcaatctggcgtgaaggaagcaatttgatc |
109 |
Q |
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|||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
35247203 |
acagtgccggacaaccttggagaaagctattctgcgaaaaggcagaacagacacaaaacatcccctaacctcaatccggcgtgaaggaagcaatctgatc |
35247104 |
T |
|
| Q |
110 |
tctgtagccttcatatctgaaccaaatccgaag |
142 |
Q |
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||| ||||||||| || ||||| |||||||||| |
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| T |
35247103 |
tctatagccttcagatatgaactaaatccgaag |
35247071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 218 - 384
Target Start/End: Original strand, 42237194 - 42237360
Alignment:
| Q |
218 |
gacgaacggcgacggaagaggagagaaacgtcggaaggagggttgccggaggaaaaaaggggagaacggtgatgcggccatgaaaggcatcgcaccacca |
317 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42237194 |
gacgaacgacgacggaagaggagagaaacgtcggaaggagggtcgtcggaggaaaaaaggggagaacggtgatgctgccatgaaaggcatcgcaccacca |
42237293 |
T |
|
| Q |
318 |
cagcaagcatctacatcgatgcggttgttgtttggatgtgaaggggaggagaggacggtgatgtagg |
384 |
Q |
| |
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|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42237294 |
caacaagcatctacatctatgcggttgttgtttggatgtgaaggggaggagaggacggtgatgtagg |
42237360 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 42236986 - 42237114
Alignment:
| Q |
11 |
acagggcccgacaaccttggagaaagctattatgcgaaaaggcagaacaa-cacaaaatatcccctaacctcaatctggcgtgaaggaagcaatttgatc |
109 |
Q |
| |
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|||| ||| ||||||||||||||||| |||| |||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
42236986 |
acagtgccggacaaccttggagaaagatattctgcgaaaaggcagaacaaacacaaaacatcccctaacctcaatccggcgtgaaggaagcaatctgatc |
42237085 |
T |
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| Q |
110 |
tctgtagccttcatatctgaaccaaatcc |
138 |
Q |
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||||||||||||| |||||||||| |||| |
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| T |
42237086 |
tctgtagccttcagatctgaaccatatcc |
42237114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 286 - 384
Target Start/End: Complemental strand, 21747353 - 21747255
Alignment:
| Q |
286 |
gtgatgcggccatgaaaggcatcgcaccaccacagcaagcatctacatcgatgcggttgttgtttggatgtgaaggggaggagaggacggtgatgtagg |
384 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21747353 |
gtgatgcggccatgaaaggcatcgcaccaccacagcaagcatctacatcgatgtggttgttgtttggatgtgaaggggaggagaggacggtgatgtagg |
21747255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 273 - 386
Target Start/End: Original strand, 20490639 - 20490752
Alignment:
| Q |
273 |
aaaggggagaacggtgatgcggccatgaaaggcatcgcaccaccacagcaagcatctacatcgatgcggttgttgtttggatgtgaaggggaggagagga |
372 |
Q |
| |
|
|||||||||||||||| ||| | |||||||| ||| |||||| |||||||||||||||||||||||||| ||| ||||||||||||| ||||| |||| |
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| T |
20490639 |
aaaggggagaacggtggtgcagtcatgaaagacattgcaccataacagcaagcatctacatcgatgcggtagttttttggatgtgaagaggaggtgaggt |
20490738 |
T |
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| Q |
373 |
cggtgatgtaggtg |
386 |
Q |
| |
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||||||||||||| |
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| T |
20490739 |
tggtgatgtaggtg |
20490752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 226 - 333
Target Start/End: Complemental strand, 27899816 - 27899710
Alignment:
| Q |
226 |
gcgacggaagaggagagaaacgtcggaaggagggttgccggaggaaaaaaggggagaacggtgatgcggccatgaaaggcatcgcaccaccacagcaagc |
325 |
Q |
| |
|
|||||| ||||| ||||| |||||||| ||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||| | |
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| T |
27899816 |
gcgacgaaagagaagagagacgtcggatggagggtctccggaggaaaag-ggggagaacggtaatgcggccatgaaaggcatcgcaccaccacaacaaac |
27899718 |
T |
|
| Q |
326 |
atctacat |
333 |
Q |
| |
|
|||||||| |
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|
| T |
27899717 |
atctacat |
27899710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 27900013 - 27899894
Alignment:
| Q |
20 |
gacaaccttggagaaagctattatgcgaaaaggcagaaca-acacaaaatatcccctaacctcaatctggcgtgaaggaagcaatttgatctctgtagcc |
118 |
Q |
| |
|
||||| |||||||||||||||| |||||||| | |||| |||||||| ||||||||||||||||| |||||||||| |||||| ||| |||| || | |
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| T |
27900013 |
gacaaacttggagaaagctattccgcgaaaagaaataacagacacaaaacatcccctaacctcaatccggcgtgaaggtagcaatctgagctctataatc |
27899914 |
T |
|
| Q |
119 |
ttcatatctgaaccaaatcc |
138 |
Q |
| |
|
|| | || |||||||||||| |
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|
| T |
27899913 |
tttagatatgaaccaaatcc |
27899894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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