View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8246_high_16 (Length: 334)
Name: NF8246_high_16
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 94 - 316
Target Start/End: Original strand, 10188286 - 10188513
Alignment:
| Q |
94 |
gtattgaaatatttttcttgaaaaattattcatcccacaaattaaggtgacaatgactaaatgaagctaattttagaaaaagtcataaccatcaacaaaa |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10188286 |
gtattgaaatatttttcttgaaaaattattcatcacacaaattaaggtgacaatgactaaatgaagctaattttagaaaaagtcataaccatcaacaaaa |
10188385 |
T |
|
| Q |
194 |
agtgccacttctaactctaacacctaagaaattggtttt------catctccatgcatcgtttctccatcatcacattactcactcattcaaacctcacc |
287 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10188386 |
agtgccacttctaactct-acacctaagaaattagttttcatctccatctccatgcatcgtttctccatcatcacattactcactcattcaaacctcacc |
10188484 |
T |
|
| Q |
288 |
atactcaaatattcatccaacacaacaca |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10188485 |
atactcaaatattcatccaacacaacaca |
10188513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University