View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_high_2 (Length: 732)
Name: NF8246_high_2
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 687; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 18 - 723
Target Start/End: Complemental strand, 30275232 - 30274529
Alignment:
| Q |
18 |
aattggtggagaaccactcagttggttttaagcatcatgaactcgatgtttttctgatgtttattgaagagggcttcaataagttgagaaatgtgttctg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275232 |
aattggtggagaaccactcagttggttttaagcatcatgaactcgatgtttttctgatgtttattgaagagggcttcaataagttgagaaatgtgttctg |
30275133 |
T |
|
| Q |
118 |
ccagcaattaattctcagagctttgtctacttgtagtagccatgaaatagcttcagctattcactataacgaccaatttgatgcaaacatgatccacaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275132 |
ccagcaattaattctcagagctttgtctacttgtagcagccatgaaatagcttcagctattcactataacgaccaatttgatgcaaacatgatccacaat |
30275033 |
T |
|
| Q |
218 |
ccaatgccttctgccatttttcaggtatgttttcactgataattccctaacaaatagtttcttctgattttgcatctatatatgcttatgtaagctttta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30275032 |
ccaatgccttctgccatttttcaggtatgttttcactgataattccctaacaaatagttgcttctgattttgcatctatatatgcttatgtaagctttta |
30274933 |
T |
|
| Q |
318 |
tatttagtataaagtctagtctctgtcatgtgtaggttttatttttagagctgaggaaaattgaaaaacttgaagaagaaaatgtgttcgaagtgaattg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30274932 |
tatttagtataaagtctagtctctgtcatgtgtaggttttatttttagagctgaggaaaattgaaaaacttgaagaagaaaatgtgttcgaagtgaattg |
30274833 |
T |
|
| Q |
418 |
gttaatggaattactgagagaggtgatggtgtgtatgtttatttgggtttccaagagcaagaagataaatgcaacaacagaagagcatgttagcttacaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30274832 |
gttaatggaattactgagagaggtgatggtgtgtatgtttatttgggtttccaagagcaagaagataaatgcaacaacagaagagcatgttagcttacaa |
30274733 |
T |
|
| Q |
518 |
actgatgaagccaaacaggttttccacttccctcccttctgtttattattgagtttcactatgagagagttttgaaaacaacatgcttctcaatttctca |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30274732 |
actgatgaagccaaacaggttttccacttccctcccttctgtttattattgagtttcactatg--agagttttgaaaacaacatgcttctcaatttctca |
30274635 |
T |
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| Q |
618 |
tccattatctttattccttgaacagtttattatggatgtgcaattcctagtggaaattggaatgtatggaggatatttctccactgatcctttacttctt |
717 |
Q |
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| T |
30274634 |
tccattatctttattccttgaacagtttattatggatgtgcaattcctagtggaaattggaatgtatggaggatatttctccactgatcctttacttctt |
30274535 |
T |
|
| Q |
718 |
ctcact |
723 |
Q |
| |
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|||||| |
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| T |
30274534 |
ctcact |
30274529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 407 - 564
Target Start/End: Original strand, 46270434 - 46270591
Alignment:
| Q |
407 |
gaagtgaattggttaatggaattactgagagaggtgatggtgtgtatgtttatttgggtttccaagagcaagaagataaatgcaacaacagaagagcatg |
506 |
Q |
| |
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|||||||||||||| | | |||||| ||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||| |||||||||||||| |
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| T |
46270434 |
gaagtgaattggttgaaaggattactaagagaggtgatggtgtgtaagtttatttgggtttccaagaacaaagagatcaatgcaataacagaagagcatg |
46270533 |
T |
|
| Q |
507 |
ttagcttacaaactgatgaagccaaacaggttttccacttccctcccttctgtttatt |
564 |
Q |
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| ||||||||||||||||| |||||||||||||| | |||||| |||| |||||||| |
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| T |
46270534 |
tgagcttacaaactgatgaggccaaacaggtttttgatttccctaccttgtgtttatt |
46270591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 279 - 373
Target Start/End: Original strand, 46270328 - 46270422
Alignment:
| Q |
279 |
ttctgattttgcatctatatatgcttatgtaagcttttatatttagtataaagtctagtctctgtcatgtgtaggttttatttttagagctgagg |
373 |
Q |
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||||||||||||||| | |||||||||| ||| ||| |||||||||| |||| |||||| || |||||| ||| ||||||| |||| |||||| |
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| T |
46270328 |
ttctgattttgcatccaagtatgcttatgcaagatttggtatttagtatgaagtttagtctatgccatgtgcaggctttatttctagaactgagg |
46270422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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