View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_high_20 (Length: 283)
Name: NF8246_high_20
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_high_20 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 26 - 188
Target Start/End: Original strand, 18709042 - 18709203
Alignment:
| Q |
26 |
atgaacaattaggcaataatcgtcttctagactcattttaattacatattacagaaaacgtattaaaatgtaacagaacaacaac-gaaatctttctttt |
124 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | || |||||| |
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| T |
18709042 |
atgaacaattaggcaataatcgtcttctaaactcattttaattacatattacagaaaacgtattaaaacgtaacagaacaacaacagcaa--aatctttt |
18709139 |
T |
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| Q |
125 |
tccatgcggatgggttacctgatcaaattatgctataatattctatcatacaccatattaaaaa |
188 |
Q |
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| T |
18709140 |
tccaagcggatgggttacctgatcaaactacgccataatattctatcatacaccatattaaaaa |
18709203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 18709234 - 18709321
Alignment:
| Q |
184 |
aaaaaagaaacacaatgttgttttttcattatgaaatattttacctgatggtttcttcagagaattttttctccggttgtttctttct |
271 |
Q |
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| T |
18709234 |
aaaaacgaaacacaatgttgttttttcattatgaaatattttacctgatggtttcttcagagaattttttctccggttgtttctttct |
18709321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 48162 - 48200
Alignment:
| Q |
145 |
gatcaaattatgctataatattctatcatacaccatatt |
183 |
Q |
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| T |
48162 |
gatcaaattacgccataatattctatcatacaccatatt |
48200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 183
Target Start/End: Complemental strand, 32931196 - 32931158
Alignment:
| Q |
145 |
gatcaaattatgctataatattctatcatacaccatatt |
183 |
Q |
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| T |
32931196 |
gatcaaattatgccataatgttctatcatacaccatatt |
32931158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 183
Target Start/End: Complemental strand, 18855843 - 18855805
Alignment:
| Q |
145 |
gatcaaattatgctataatattctatcatacaccatatt |
183 |
Q |
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| T |
18855843 |
gatcaaattatgctataatgttctatcataaaccatatt |
18855805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 45289137 - 45289175
Alignment:
| Q |
145 |
gatcaaattatgctataatattctatcatacaccatatt |
183 |
Q |
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||||||||||||||||||| |||||||||| |||||||| |
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| T |
45289137 |
gatcaaattatgctataatgttctatcataaaccatatt |
45289175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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