View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_high_23 (Length: 272)
Name: NF8246_high_23
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 39578687 - 39578939
Alignment:
| Q |
1 |
gagaagtgagctatctacaaaacagttcatggagacacttgcgtgttgattgttgtcccttgattttcttcgcatgaaattctgtctagcatcgtcagcg |
100 |
Q |
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| T |
39578687 |
gagaagtgagctatctacaaaacagttcatggagacacttgcgtgttgattgttgtcccttgattttcttcgcatgaaattctgtctagcatcgtcagcg |
39578786 |
T |
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| Q |
101 |
ctgcactttcagattcatcaaccctcccagtagacgtgccatccacttcagtcagggtagacagagaaggtaaacgctgaacattaggcaattgaagtga |
200 |
Q |
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| T |
39578787 |
ctgcactttcagattcatcaaccctcccagtagacgtgccatccactttagtcagggtagacagagaaggtaaacgctgaacattaggcaattgaagtga |
39578886 |
T |
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| Q |
201 |
tgcaaaagcactgctagaactatcctcatgtggttctctctgaagctgcaaag |
253 |
Q |
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| T |
39578887 |
tgcaaaagcactgctagaactatcctcatgtggttctctctgaagctgcaaag |
39578939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 39542337 - 39542571
Alignment:
| Q |
19 |
aaaacagttcatggagacacttgcgtgttgattgttgtcccttgattttcttcgcatgaaattctgtctagcatcgtcagcgctgcactttcagattcat |
118 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39542337 |
aaaacagctcatggagacacttgcgtgttgattgttgtaccttgatttgcatcgcatgaaattctgtctagcatcatcagcgctgcactttcagattcat |
39542436 |
T |
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| Q |
119 |
caaccctcccagtagacgtgccatccacttcagtcagggtagacagagaaggtaaacgctgaacattaggcaattgaagtgatgcaaaagcactgctaga |
218 |
Q |
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| T |
39542437 |
caaccctcccagtagacgtgccatccacttcagtcagtgcagacagagaaggtaaacgctgaacattaggcaattgaagtgacgcaaaagcactgctaga |
39542536 |
T |
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| Q |
219 |
actatcctcatgtggttctctctgaagctgcaaag |
253 |
Q |
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| T |
39542537 |
actatccctgtgtggttctctctgcagctgcaaag |
39542571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 39574183 - 39574406
Alignment:
| Q |
30 |
tggagacacttgcgtgttgattgttgtcccttgattttcttcgcatgaaattctgtctagcatcgtcagcgctgcactttcagattcatcaaccctccca |
129 |
Q |
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|||||||| |||||||||||||||||| ||||||||| |||||||||||| ||| ||||||||| ||| | |||||||||||||||||||| ||||||| |
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| T |
39574183 |
tggagacatttgcgtgttgattgttgtgccttgatttgcttcgcatgaaagtctatctagcatcatcaatgttgcactttcagattcatcaatcctccca |
39574282 |
T |
|
| Q |
130 |
gtagacgtgccatccacttcagtcagggtagacagagaaggtaaacgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctcat |
229 |
Q |
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| T |
39574283 |
gtagacgtgccatccacttcagtcggtgtagacagagaaggtaaatgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctcat |
39574382 |
T |
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| Q |
230 |
gtggttctctctgaagctgcaaag |
253 |
Q |
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| T |
39574383 |
gcggttctctctgaagctgcaaag |
39574406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 131 - 239
Target Start/End: Original strand, 39516437 - 39516545
Alignment:
| Q |
131 |
tagacgtgccatccacttcagtcagggtagacagagaaggtaaacgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctcatg |
230 |
Q |
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|||||||| ||||| ||||| |||| |||||||||||||| ||||| |||||||||||||||||| |||| || ||||||||||||||||||||||||| |
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| T |
39516437 |
tagacgtgtcatccccttcactcagtgtagacagagaaggcaaacggcgaacattaggcaattgaattgatacagaagcactgctagaactatcctcatg |
39516536 |
T |
|
| Q |
231 |
tggttctct |
239 |
Q |
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|||||||| |
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| T |
39516537 |
aggttctct |
39516545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 39509378 - 39509477
Alignment:
| Q |
140 |
catccacttcagtcagggtagacagagaaggtaaacgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctcatgtggttctct |
239 |
Q |
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||||||||||| |||| ||| ||||||||||||||| ||||||| |||||||||| |||| || |||||||| |||||||||||||||| |||||||| |
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| T |
39509378 |
catccacttcactcagtgtattcagagaaggtaaacggcgaacattgggcaattgaattgatacagaagcactgttagaactatcctcatgaggttctct |
39509477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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