View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_high_24 (Length: 252)
Name: NF8246_high_24
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_high_24 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 39189135 - 39188895
Alignment:
| Q |
12 |
agatgaagaaaaattggataatacctttaagtgttgtccattatggagttgaacaacagtatcaaactctctatctaaggtacttgcagcaacagttaat |
111 |
Q |
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| T |
39189135 |
agatgaagaaaaattggataataccttaaagtgttgtccattatggagttgaacaacagtatcaaactctctatctaaggtacttgcagcaacagttaat |
39189036 |
T |
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| Q |
112 |
atccaaggtgcaacatttgaaacagttccaaatgttggtccagaatttccagctgaacacaacacagtgatgcctttcttaacagcatgaaatgcagcaa |
211 |
Q |
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| T |
39189035 |
atccaaggtgcaacatttgaaacagttccaaatgttggtccagaatttccagctgaacacaacacagtgatgcctttcttaacagcatgaaatgcagcaa |
39188936 |
T |
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| Q |
212 |
ttgaaagagcatcatcaaagtaatcaacagcaggacttcca |
252 |
Q |
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| T |
39188935 |
ttgaaagagcatcatcaaagtaatcaacagcaggacttcca |
39188895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 56231405 - 56231184
Alignment:
| Q |
16 |
gaagaaaaattggataatacctttaagtgttgtccattatggagttgaacaacagtatcaaactctctatctaaggtacttgcagcaacagttaatatcc |
115 |
Q |
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| T |
56231405 |
gaagaaaaattggataataccctaaagtgttgtccattatggagttgaacactagcatcaaaatctctatctatggtacttgcagcaacagttaatatcc |
56231306 |
T |
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| Q |
116 |
aaggtgcaacatttgaaacagttccaaatgttggtccagaatttccagctgaacacaacacagtgatgcctttcttaacagcatgaaatgcagcaattga |
215 |
Q |
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| T |
56231305 |
aaggtgcaacatttgaaacagttccaggtgttggtcctgaatttccagctgaacacaacacagtgatgccttccttaactgcgtgaaatgcagcgattga |
56231206 |
T |
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| Q |
216 |
aagagcatcatcaaagtaatca |
237 |
Q |
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| T |
56231205 |
aaggccatcatcaaagtaatca |
56231184 |
T |
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