View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_high_26 (Length: 243)
Name: NF8246_high_26
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 39188845 - 39188621
Alignment:
| Q |
1 |
ctgccatgatatcagcatcaaagcattcgctgccatcaattggtggccagcagactttgtaagcagcaactcttgctttgggagagccacctttagcagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39188845 |
ctgccatgatatcagcatcaaagcattcgctgccatcaattggtggccagcagactttgtaagcagcaactcttgctttgggagagccacctttagcagt |
39188746 |
T |
|
| Q |
101 |
tccgttgcctaagccaacaaaattagctccggaaacaaagtttcctcctaatgttgatagtgtgtgagatccatgacctttattatctcgtggagtatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39188745 |
tccgttgcctaagccaacaaaattagctccggaaacaaagttccctcctaatgttgatagtgtgtgagatccatgacctttattatctcgtggagtatca |
39188646 |
T |
|
| Q |
201 |
agtgtgccgttttgtaccacctctg |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
39188645 |
agtgtgccgttttgtaccacctctg |
39188621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 56231119 - 56230904
Alignment:
| Q |
1 |
ctgccatgatatcagcatcaaagcattcgctgccatcaattggtggccagcagactttgtaagcagcaactcttgctttgggagagccacctttagcagt |
100 |
Q |
| |
|
||||||| |||||||||||||| ||| || || |||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
56231119 |
ctgccattatatcagcatcaaaacatccgttgtgatcaattgctggccaacagactttgtaagcagcaactcttgctttgggagaaccacctttcgcagt |
56231020 |
T |
|
| Q |
101 |
tccgttgcctaagccaacaaaattagctccggaaacaaagtttcctcctaatgttgatagtgtgtgagatccatgacctttattatctcgtggagtatca |
200 |
Q |
| |
|
||| || |||||||||| || |||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||| |
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| T |
56231019 |
tccatttcctaagccaaaaacattaactccagaaacaaagtttcctcctattgttgatagtgtgtgagatccatgaccttcattgtctcgtgcagtatca |
56230920 |
T |
|
| Q |
201 |
agtgtgccgttttgta |
216 |
Q |
| |
|
||||||||||| |||| |
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| T |
56230919 |
agtgtgccgttctgta |
56230904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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