View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_high_28 (Length: 231)
Name: NF8246_high_28
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 37636254 - 37636024
Alignment:
| Q |
1 |
aatcaacattgcctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatcaaacactaacaaatagtaactatttttatttaggataatgtg |
100 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37636254 |
aatcaacactacctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatcaaacactaacaaatagtaactatttttgtttaggataatgtg |
37636155 |
T |
|
| Q |
101 |
aaactgagatacaaatagttacaaatggtaaacaag-ttatgaaaaatactcaaaaataatgttgtttgttgtgcaagcatgtctctcatttcaaagctc |
199 |
Q |
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|
|||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37636154 |
aaactgagatacaaatagttacaaatgggaaacaagtttatgaaaaatactaaaaaataatgttgtttgttgtgcaagcatgtctctcatttcaaagctc |
37636055 |
T |
|
| Q |
200 |
gaaacagtgatccaacaatggaaaatgaaga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
37636054 |
caaacagtgatccaacaatggaaaatgaaga |
37636024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 37639168 - 37638938
Alignment:
| Q |
1 |
aatcaacattgcctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatcaaacactaacaaatagtaactatttttatttaggataatgtg |
100 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37639168 |
aatcaacactacctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatcaaacactaacaaatagtaactatttttgtttaggataatgtg |
37639069 |
T |
|
| Q |
101 |
aaactgagatacaaatagttacaaatggtaaacaag-ttatgaaaaatactcaaaaataatgttgtttgttgtgcaagcatgtctctcatttcaaagctc |
199 |
Q |
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|
|||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37639068 |
aaactgagatacaaatagttacaaatgggaaacaagtttatgaaaaatactaaaaaataatgttgtttgttgtgcaagcatgtctctcatttcaaagctc |
37638969 |
T |
|
| Q |
200 |
gaaacagtgatccaacaatggaaaatgaaga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
37638968 |
caaacagtgatccaacaatggaaaatgaaga |
37638938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 37650368 - 37650138
Alignment:
| Q |
1 |
aatcaacattgcctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatcaaacactaacaaatagtaactatttttatttaggataatgtg |
100 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37650368 |
aatcaacactacctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatcaaacactaacaaatagtaactatttttgtttaggataatgtg |
37650269 |
T |
|
| Q |
101 |
aaactgagatacaaatagttacaaatggtaaacaag-ttatgaaaaatactcaaaaataatgttgtttgttgtgcaagcatgtctctcatttcaaagctc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37650268 |
aaactgagatacaaatagttacaaatgggaaacaagtttatgaaaaatactaaaaaataatgttgtttgttgtgcaagcatgtctctcatttcaaagctc |
37650169 |
T |
|
| Q |
200 |
gaaacagtgatccaacaatggaaaatgaaga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
37650168 |
caaacagtgatccaacaatggaaaatgaaga |
37650138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 37644542 - 37644312
Alignment:
| Q |
1 |
aatcaacattgcctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatcaaacactaacaaatagtaactatttttatttaggataatgtg |
100 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
37644542 |
aatcaacactacctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatgaaacactaacaaatagtaactatttttgtttaggataatgtg |
37644443 |
T |
|
| Q |
101 |
aaactgagatacaaatagttacaaatggtaaacaag-ttatgaaaaatactcaaaaataatgttgtttgttgtgcaagcatgtctctcatttcaaagctc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37644442 |
aaactgagatacaaatagttacaaatgggaaacaagtttgtgaaaaatactaaaaaataatgttgtttgttgtgcaagcatgtctctcatttcaaagctc |
37644343 |
T |
|
| Q |
200 |
gaaacagtgatccaacaatggaaaatgaaga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
37644342 |
caaacagtgatccaacaatggaaaatgaaga |
37644312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 37647455 - 37647225
Alignment:
| Q |
1 |
aatcaacattgcctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatcaaacactaacaaatagtaactatttttatttaggataatgtg |
100 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37647455 |
aatcaacactacctgctaactgaaatttcaggcaccaaagcacgaaatcgcaggcatcaaacactaacaaatagtaactatttttgtttaggataatgtg |
37647356 |
T |
|
| Q |
101 |
aaactgagatacaaatagttacaaatggtaaacaag-ttatgaaaaatactcaaaaataatgttgtttgttgtgcaagcatgtctctcatttcaaagctc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37647355 |
aaactgagatacaaatagttacaaatgggaaacaagtttgtgaaaaatactaaaaaataatgttgtttgttgtgcaagcatgtctctcatttcaaagctc |
37647256 |
T |
|
| Q |
200 |
gaaacagtgatccaacaatggaaaatgaaga |
230 |
Q |
| |
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|||| ||||||||||||||||||||||||| |
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|
| T |
37647255 |
caaaccgtgatccaacaatggaaaatgaaga |
37647225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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