View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8246_high_3 (Length: 658)

Name: NF8246_high_3
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8246_high_3
NF8246_high_3
[»] chr3 (1 HSPs)
chr3 (7-641)||(49921350-49921984)


Alignment Details
Target: chr3 (Bit Score: 611; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 7 - 641
Target Start/End: Complemental strand, 49921984 - 49921350
Alignment:
Q  7 gagatgaacacgttcagacacaatacgcaagcgcgcattagctgtaaggaattcacagagcaattttaatccagaaaagggaaacttcaaagcaatcata 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49921984 gagatcaacacgttcagacacaatacgcaagcgcgcattagctgtaaggaattcacagagcaattttaatccagaaaagggaaacttcaaagcaatcata 49921885  T
Q  107 caatatcattatgcacaaaatcagtatagtgacagcttcatatctttcagatatcaattcacaacttcctatcttttaaaagagcttatataaattcaga 206  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49921884 caatatcattatgcacaaaatcagtatagtgacaccttcatatctttcagatatcaattcacaacttcctatcttttaaaagagcttatataaattcaga 49921785  T
Q  207 aacttaaaatgtagtgataagaagtttgcaacaaaacacagtcttaactctaaaactcgttgataagataaacttttcccttgcaaaggaagacaataaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49921784 aacttaaaatgtagtgataagaagtttgcaacaaaacacagtcttaattctaaaactcgttgataagataaacttttcccttgcaaaggaagacaataaa 49921685  T
Q  307 acttacgagaaagtggtgcagccgatgaatatcgttctggctttcgggattctaccctttaaatatatggaaagagttagtttcctacaacaatcaatga 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49921684 acttacgagaaagtggtgcagccgatgaatatcgttctggctttcgggattctaccctttaaatatatggaaagagttagtttccttcaacaatcaatga 49921585  T
Q  407 aaaattacaggcaacaagaggggttgtaaaccaactagtttaattatagttttgttggcactagtgaccccacatccatggccaaagcattatttactcg 506  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49921584 aaaattacaggcaacaggaggggttgtataccaactagtttaattatagttttgttggcactagtgaccccacatccatggccaaagcattatttactcg 49921485  T
Q  507 tgctaataatttggagatgtgttaatggctagttatatggtcgacatactcataataacccattcaacaatatcaataacatgtttaatgaacttctttt 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49921484 tgctaataatttggagatgtgttaatggctagttatatggtcgacatactcataataacccattcaacaatatcaataacatgtttaatgaacttctttt 49921385  T
Q  607 ctcaattggactaacatagtgtggcatatcataac 641  Q
    |||||||||||||||||||||||||||||||||||    
T  49921384 ctcaattggactaacatagtgtggcatatcataac 49921350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University