View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_high_8 (Length: 424)
Name: NF8246_high_8
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 33 - 374
Target Start/End: Complemental strand, 47494067 - 47493729
Alignment:
| Q |
33 |
ttgtgaatttttatgtacgaaaaaggaaagtgaagcagaagaggaatttaaggaagctttcagggtgttcgacaaagataaagatggttacatatcaccc |
132 |
Q |
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| T |
47494067 |
ttgtgaatttgtatgtacgaaaaaggaaagtgaagcggaagaggaatttaaggaagctttcagggtgttcgacaaagataaagatggttacatatcaccc |
47493968 |
T |
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| Q |
133 |
agtgaggtataattaattcaacatatataatttgttttgtcgtaccgtaatattgaactatataattgatattacgtgtgagcccagttgaggtcagtat |
232 |
Q |
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| T |
47493967 |
agtgaggtataattaattcaacatatataatttgttttgttgtaccgtaat---gaactatataattgatattacgtgtgagcccagttgaggtcagtat |
47493871 |
T |
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| Q |
233 |
tgagtaccatcggagaaaaggtgacagacgaagaactggaacagatgatcaaaacggctgatctggatggtgacggtctcgttgattatcaagagttcgt |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47493870 |
tgagtaccatcggagaaaaggtgacagacgaagaactggagcagatgatcaaaacggctgatctggatggtgacggcctcgttgattatcaagagttcgt |
47493771 |
T |
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| Q |
333 |
caggatgatgttggctgtttaatcactaaaatgaagctctca |
374 |
Q |
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| T |
47493770 |
caggatgatgttgactgtttaatcactaaaatgaagctctca |
47493729 |
T |
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