View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_low_1 (Length: 821)
Name: NF8246_low_1
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 4709905 - 4709593
Alignment:
| Q |
18 |
cttgcttagctcatgctttagttcaagcaaatgaaatcaaagttatctaaattcaaaagacataccacaaacaatttgatgcagaaaatatacaagacac |
117 |
Q |
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| T |
4709905 |
cttgcttagctcatgctttagttcaagcaaatgaaatcaaagttatctaaattcaaaagacataccacaaacaatttgatgcagaaaatatacaagacac |
4709806 |
T |
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| Q |
118 |
caggaagagcatataatgagataaaatttggagtttgtgattttgcattacgggaagtattctggcttacagtgaccctgcataagacacagacattgaa |
217 |
Q |
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| T |
4709805 |
caggaagagcatataatgagataaaatttggagtttgtgattttgcattacgggaagtattctggcttacagtgaccctgcataagacacagacattgaa |
4709706 |
T |
|
| Q |
218 |
aagtattttttagaaacagaagaactttggagagttgatggtctatttttggggagagattaggttgattgnnnnnnnnagacgggacaactttaaagaa |
317 |
Q |
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| T |
4709705 |
aagtattttttagaaacagaagaactttggagagttgatggtctatttttggggagagattaggttgattgttttttttagacgggacaactttaaagaa |
4709606 |
T |
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| Q |
318 |
acaagtcaatatt |
330 |
Q |
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| T |
4709605 |
acaagtcaatatt |
4709593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 413 - 673
Target Start/End: Complemental strand, 4709509 - 4709249
Alignment:
| Q |
413 |
ccatctccacttcgatgagtaacgcatttgtctttcaagcaattgatgttgattatatatgtttgtccaattactactgcaagaaaatggcatatgccaa |
512 |
Q |
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| T |
4709509 |
ccatctccacttcgatgagtaacgcatttgtctttcaagcaattgatgttgattatatatgtttgtccaattactactgcaagaaaatggcatatgccaa |
4709410 |
T |
|
| Q |
513 |
cggaggtttatagtgacggattttaaatcgtaggtatagaaaagctatacctatggagaaaagtattagtcgtaggtatagttaacccaaaaattaaaac |
612 |
Q |
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| T |
4709409 |
cggaggtttatagtgacggattttaaatagtaggtatagaaaagctatacctatggagaaaagtattagtcgtaggtatagttaacccaaaaattaaaac |
4709310 |
T |
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| Q |
613 |
aatcaaatacattcgaagtagataaggtcacccagtgaaatgttaacaccgccaaaacaca |
673 |
Q |
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| T |
4709309 |
aatcaaatacatttgaagtatataaggtcgcccagtgaaatgttaacaccgccaaaacaca |
4709249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 4844311 - 4844248
Alignment:
| Q |
86 |
aaacaatttgatgcagaaaatatacaagacaccaggaagagcatataatgagataaaatttgga |
149 |
Q |
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| T |
4844311 |
aaacaatttgaggcagaaaatgtagaagacaccaagaagagcatataatgagataaaatttgga |
4844248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 39251241 - 39251162
Alignment:
| Q |
83 |
cacaaacaatttgatgcagaaaatatacaagacaccaggaagagcatataatgagat-aaaatttggagtttgtgatttt |
161 |
Q |
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|||| |||||||||||||||||| |||||||||| || ||||| ||||||| ||||| |||| ||||||||||||||||| |
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| T |
39251241 |
cacagacaatttgatgcagaaaacatacaagacaacaagaagaacatataacgagataaaaacttggagtttgtgatttt |
39251162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 178
Target Start/End: Complemental strand, 39262318 - 39262221
Alignment:
| Q |
83 |
cacaaacaatttgatgcagaaaatatacaagacaccaggaagagcatataatgagat--aaaatttggagtttgtgattttgcattacgggaagtatt |
178 |
Q |
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|||| ||||||||||| |||||| |||||||||| || ||||||||||||| ||||| |||| ||| ||||||||||||| | |||||||| ||||| |
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| T |
39262318 |
cacagacaatttgatgaagaaaacatacaagacaacaagaagagcatataacgagataaaaaaattgaagtttgtgattttaccttacgggaggtatt |
39262221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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