View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_low_10 (Length: 486)
Name: NF8246_low_10
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 112 - 472
Target Start/End: Original strand, 44370913 - 44371279
Alignment:
| Q |
112 |
taattaccaaacaaatatatttttagccatatgaaataatataaactatccgagctcaaaaactgattgtgact------------actggggaagtaaa |
199 |
Q |
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| T |
44370913 |
taattaccaaacaaatatatttttagccatatgaaataatataaactatccgagctcaaaaattgattgtgactgcaacatttgtgactggggaagtaaa |
44371012 |
T |
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| Q |
200 |
ttacttcagttgaagtaaattatttcaattccagttctaattatctgtacaatcaaatttgatttcaatcaagaggataaatacatgttgattatacagc |
299 |
Q |
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| T |
44371013 |
ttacttcagttgaagtaaattatttcaattccagttctaattatctgtacaatcaaatttgatttcaatcaagaggataaatacatgttgattatacagc |
44371112 |
T |
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| Q |
300 |
agcaacaattgtgaccaccgttggatataatgttgattacttctactaaaccattagttacattcccttcatatcttcaagtaagtctacttagtgcatg |
399 |
Q |
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| T |
44371113 |
agcaacaattgtgaccaccgttggatataatgttgattaattctactaaaccatcagttacattgccttcatatcttcaagtaagtcta------tcatg |
44371206 |
T |
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| Q |
400 |
tttagattgacagtaaatttagtataatcacgcatttttaacaaatgctacaatatagcgatgtgatttcatc |
472 |
Q |
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| T |
44371207 |
tttagattgacagtaaatttagtataatcacgcatttttaacaaatgctactatatagcgatgtgatttcatc |
44371279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 52
Target Start/End: Original strand, 44370823 - 44370853
Alignment:
| Q |
22 |
acttgaaatagattaccaaacagtattccct |
52 |
Q |
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| T |
44370823 |
acttgaaatagattaccaaacagtattccct |
44370853 |
T |
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