View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8246_low_14 (Length: 403)
Name: NF8246_low_14
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 44226817 - 44227198
Alignment:
| Q |
18 |
tctaagagggaattgagatcaaggttttaagtcgtggtgcttcagtgatgaaaaattgtttttgtctgaattgattttggttagaattaagttcaatgta |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44226817 |
tctaagattgaattgagatcaaggttttaagtcgtggtgcttcagtgatgaaaaattgtttttgtctgaattgattttggttagaattaagttcaatgta |
44226916 |
T |
|
| Q |
118 |
acatgagttatgtttggataaaaaatgatttt--ttataatttgtgtttggatagtttggaatttgaatcagtattgcttttgtgtgtgtatctagctat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44226917 |
acatgagttatgtttggataaaaaatgattttttttataatttgtgtttggatagtttggactttgaatcagtattgcttttgtgtgtgtatctaactat |
44227016 |
T |
|
| Q |
216 |
ctaagggtgccaattttaacaaatttcagaatcgattctatgtgaactcataagctagaaatcattgcttttggaaatcaaacataacaaatttgccatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44227017 |
ctaagggtgccaattttaacaaatttcagaattgattctatgtgaactcataagctagaaatcattgcttttggaaatcaaacataacaaatttgccatt |
44227116 |
T |
|
| Q |
316 |
aaatcacgtttgactaatcaaaagtgattctaggaggtccaaaccaaacataggcttactattacaattagggtacaattgc |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44227117 |
aaatcacgtttgactaatcaaaagtgattctaggaggcccaaaccaaacataggcttactattacaattagggtacaattgc |
44227198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 22699832 - 22699763
Alignment:
| Q |
68 |
aaaaattgtttttgtctgaattgattttggttagaattaagttcaatgtaacatgagttatgtttggata |
137 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| || |||||| ||||||| ||| ||||||||||||| |
|
|
| T |
22699832 |
aaaaattgattttggtagaattgattttggttaaaagtaagttgaatgtaaagtgatttatgtttggata |
22699763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 22980698 - 22980767
Alignment:
| Q |
68 |
aaaaattgtttttgtctgaattgattttggttagaattaagttcaatgtaacatgagttatgtttggata |
137 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| || |||||| ||||||| ||| ||||||||||||| |
|
|
| T |
22980698 |
aaaaattgattttggtagaattgattttggttaaaagtaagttgaatgtaaagtgatttatgtttggata |
22980767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 22994285 - 22994354
Alignment:
| Q |
68 |
aaaaattgtttttgtctgaattgattttggttagaattaagttcaatgtaacatgagttatgtttggata |
137 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| || |||||| ||||||| ||| ||||||||||||| |
|
|
| T |
22994285 |
aaaaattgattttggtagaattgattttggttaaaagtaagttgaatgtaaagtgatttatgtttggata |
22994354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University