View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_low_15 (Length: 392)
Name: NF8246_low_15
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 12 - 378
Target Start/End: Original strand, 54479408 - 54479773
Alignment:
| Q |
12 |
aagaaacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatc |
111 |
Q |
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| T |
54479408 |
aagaaacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatc |
54479507 |
T |
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| Q |
112 |
atgaatcaggtgccaagaatagagttctttatttaacttatcttggactcttgcaaacaacttgatcatcccagaccctttgatactggaccctttgatt |
211 |
Q |
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| T |
54479508 |
atgaatcaggtgccaagaatagagttctttatttaacttatcttggactct-gcaaacaacttgatcatcccagaccctttgatactggaccctttgatt |
54479606 |
T |
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| Q |
212 |
atgatgcttgatcactgactcatttcatgcatatcatctattatattttatattagtcttaaggtttgttgccatttattttcttatttcgttcatactt |
311 |
Q |
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| T |
54479607 |
atgatgcttgatcactgactcatttcatgcatatcatctattatattttatattagtcttaaggtttgttgccatttattttcttatttcgttcatactt |
54479706 |
T |
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| Q |
312 |
cgtcttatacatgcaaatgtataatctcctctatattcaccaaaaacaatacgtacttgtttaatct |
378 |
Q |
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| T |
54479707 |
tgtcttatacatgcaaatgtataatctcctctatattcaccaaaaacaatacgtacttgtttaatct |
54479773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 25044465 - 25044311
Alignment:
| Q |
23 |
tatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggt |
122 |
Q |
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| T |
25044465 |
tatcaattggttgtttctgctgttgggacaaatgctgggttgttgcaatcttaaacaattgaagtatttttgcaagtataacaaccatcatagaacaggt |
25044366 |
T |
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| Q |
123 |
gccaagaatagagttctttatttaacttatcttggactcttgcaaacaacttgatc |
178 |
Q |
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| T |
25044365 |
gccaaaaatagggttctttatttaacttatcttgaact-atgcaaacaacttgatc |
25044311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 25040630 - 25040598
Alignment:
| Q |
120 |
ggtgccaagaatagagttctttatttaacttat |
152 |
Q |
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| T |
25040630 |
ggtgccaagaatagagttctttatttgacttat |
25040598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 10124244 - 10124187
Alignment:
| Q |
120 |
ggtgccaagaatagagttctttatttaacttatcttggactcttgcaaacaacttgatc |
178 |
Q |
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| T |
10124244 |
ggtgccaagaatagggttctttatttaacttatcttgaact-ttgcaaacaacttgatc |
10124187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 28649836 - 28649786
Alignment:
| Q |
129 |
aatagagttctttatttaacttatcttggactcttgcaaacaacttgatcat |
180 |
Q |
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| T |
28649836 |
aatagagttctttatttaacttatcttgaact-atgcaaataacttgatcat |
28649786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 21393101 - 21393244
Alignment:
| Q |
9 |
gagaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaaga |
108 |
Q |
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||||||||| || |||||| ||| ||||||| || | ||||||||||| || || |||| || | |||| |||||||||| ||||| ||| ||| |
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| T |
21393101 |
gagaagaaaaagaatatcaattggttgtttctattgctgggacaaatgctcggttgttgcaagcttgaacaattgaagtatttttgcaagtacaacaatc |
21393200 |
T |
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| Q |
109 |
atcatgaatcaggtgccaagaatagagttctttatttaacttat |
152 |
Q |
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| T |
21393201 |
atcatcgaaccggtgccaagaatagagttctttatttgacttat |
21393244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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