View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_low_18 (Length: 348)
Name: NF8246_low_18
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 331
Target Start/End: Original strand, 27090774 - 27091090
Alignment:
| Q |
14 |
ttctactattgttgggcaatgttcatcttcatgatattggatatttgaacatttgtaggagttcattgagcttggtgagcttccatcatcattcatatat |
113 |
Q |
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| T |
27090774 |
ttctactattgttgggcaatgctcatcttcatgatattggatatttgaacatttgtaggagttcattgagcttggtgagcttccatcatcattcatatat |
27090873 |
T |
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| Q |
114 |
aaatctacaaaatacatatatggttcataaatgaggcagaacaacgtatcattcaaatctataaaataatatgtaaaaagtgtgctaaagattttgctag |
213 |
Q |
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| T |
27090874 |
aaatctacaaaatacatatatggttcataaatgaggcagaacaacgtatcattcaaatctataaaataatatgtaaaaagtgtgctaaagattttgctag |
27090973 |
T |
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| Q |
214 |
tattatccaaacttgaaacatatatttaccaaagtgttttacaagtaaaattaccttgattccattcttgaggaaacatgctatgctttgcacagaagtg |
313 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27090974 |
tattatccaaacttgaaa-atatatttaccaaagtgttttacaagtaaaattaccttgattccattcttgaggaaacatgctatgctttgcacagaagtg |
27091072 |
T |
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| Q |
314 |
ggccttggagtgagactt |
331 |
Q |
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|||||||||||||||||| |
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| T |
27091073 |
ggccttggagtgagactt |
27091090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 27187527 - 27187211
Alignment:
| Q |
14 |
ttctactattgttgggcaatgttcatcttcatgatattggatatttgaacatttgtaggagttcattgagcttggtgagcttccatcatcattcatatat |
113 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27187527 |
ttctactattgttgggcaatgctcatcttcatgatattggatatttgaacatttgtaggagttcattgagcttggtgagcttccatcatcattcatatat |
27187428 |
T |
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| Q |
114 |
aaatctacaaaatacatatatggttcataaatgaggcagaacaacgtatcattcaaatctataaaataatatgtaaaaagtgtgctaaagattttgctag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27187427 |
aaatctacaaaatacatatatggttcataaatgaggcagaacaacgtatcattcaaatctataaaataatatgtaaaaagtgtgctaaagattttgctag |
27187328 |
T |
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| Q |
214 |
tattatccaaacttgaaacatatatttaccaaagtgttttacaagtaaaattaccttgattccattcttgaggaaacatgctatgctttgcacagaagtg |
313 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27187327 |
tattatccaaacttgaaa-atatatttaccaaagtgttttacaagtaaaattaccttgattccattcttgaggaaacatgctatgctttgcacagaagtg |
27187229 |
T |
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| Q |
314 |
ggccttggagtgagactt |
331 |
Q |
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|||||||||||||||||| |
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| T |
27187228 |
ggccttggagtgagactt |
27187211 |
T |
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