View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_low_19 (Length: 344)
Name: NF8246_low_19
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 35536042 - 35535719
Alignment:
| Q |
16 |
aaaaatacatgtttgttatataagttttgaagaaaagaattatcaataaaataaaagtaaattgaatgaacatgatgtatctttttgtatatataaaaag |
115 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35536042 |
aaaaatacatgtttgctatataagttttgaagaaaagaattatcaataaaataaaagtaaattgaatgaacatgatgtatctttttgtatatataaaaag |
35535943 |
T |
|
| Q |
116 |
ttgaatgtatatacctgtggttcaccggtccatctcattggagctgaagaaaggccaacctcttgttcatatgagcttgtgtgccatagatcactaagga |
215 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| || ||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||||| |
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| T |
35535942 |
ttgaatgtatatacctgtggttcaccaatccatctcattggggcagaagagaggccaacctcttgttcatgtgaacttgtgtgccacagatcactaagga |
35535843 |
T |
|
| Q |
216 |
gcagattgaactcaccatcataatgaaatggctctctttggttctttggtaaatctactatcaaagaaccatacaaccctgctgctctttgcataccata |
315 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
35535842 |
gcagattgaactcaccatcgtaatgaaatggctctctttggctctttggtaaatccactattagagaaccatacaaccctgctgctctttgcataccata |
35535743 |
T |
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| Q |
316 |
gtgtccatgatagaataatgtacc |
339 |
Q |
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||||||||||||||| ||||||| |
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| T |
35535742 |
gtgtccatgatagaaatatgtacc |
35535719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 68 - 339
Target Start/End: Complemental strand, 35506172 - 35505901
Alignment:
| Q |
68 |
aaaagtaaattgaatgaacatgatgtatctttttgtatatataaaaagttgaatgtatatacctgtggttcaccggtccatctcattggagctgaagaaa |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| | |
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| T |
35506172 |
aaaagtaaattgaatgaacatgatgtatctttttgtatatataaaaagttgaatgtatatacctgtggttcaccaatccatctcattggggcagaagaga |
35506073 |
T |
|
| Q |
168 |
ggccaacctcttgttcatatgagcttgtgtgccatagatcactaaggagcagattgaactcaccatcataatgaaatggctctctttggttctttggtaa |
267 |
Q |
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|||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35506072 |
ggccaacctcttgttcatgtgaacttgtgtgccacagatcactaaggagcagattgaactcaccatcttaatgaaatggctctctttggttctttggtaa |
35505973 |
T |
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| Q |
268 |
atctactatcaaagaaccatacaaccctgctgctctttgcataccatagtgtccatgatagaataatgtacc |
339 |
Q |
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||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35505972 |
atccactattagagaaccatacaaccctgctgctctttgcataccatagtgtccatgatagaaatatgtacc |
35505901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 72 - 339
Target Start/End: Complemental strand, 35523559 - 35523297
Alignment:
| Q |
72 |
gtaaattgaatgaacatgatgtatctttttgtatatat-aaaaagttgaatgtatatacctgtggttcaccggtccatctcattggagctgaagaaaggc |
170 |
Q |
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|||||||||||||||||||| | ||||||||| | ||||||||||| |||||||||||||||||| ||||||||||||| || ||||| |||| |
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| T |
35523559 |
gtaaattgaatgaacatgatat----ttttgtataaaagaaaaagttgaaa--atatacctgtggttcaccaatccatctcattggggcagaagagaggc |
35523466 |
T |
|
| Q |
171 |
caacctcttgttcatatgagcttgtgtgccatagatcactaaggagcagattgaactcaccatcataatgaaatggctctctttggttctttggtaaatc |
270 |
Q |
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||||||||||||||| ||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35523465 |
caacctcttgttcatgtgaacttgtgtgccacagatcactaaggagcagtttgaactcaccatcttaatgaaatggctctctttggttctttggtaaatc |
35523366 |
T |
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| Q |
271 |
tactatcaaagaaccatacaaccctgctgctctttgcataccatagtgtccatgatagaataatgtacc |
339 |
Q |
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||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35523365 |
cactattagagaaccatacaaccctgctgctctttgcataccatagtgtccatgatagaaatatgtacc |
35523297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 125 - 330
Target Start/End: Original strand, 1833377 - 1833581
Alignment:
| Q |
125 |
tatacctgtggttcaccggtccatctcattggagctgaagaaaggccaacctcttgttcatatgagcttgtgtgccatagatcactaaggagcagattga |
224 |
Q |
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||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| |||| |
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| T |
1833377 |
tatacttgtggttcaccaatccatctcattggggctgaagagaggccaacctcttgttcatgtgaacttgtgtgccacagatcactaaggagcaggttga |
1833476 |
T |
|
| Q |
225 |
actcaccatcataatgaaatggctctctttggttctttggtaaatctactatcaaagaaccatacaaccctgctgctctttgcataccatagtgtccatg |
324 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||| |||||||| ||||||||||| |
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| T |
1833477 |
actcaccatcataatcaaatggctcgctttggttctttggtaaatctattatcaaagaaccatacaacccaggtgctctctgcatacc-tagtgtccatg |
1833575 |
T |
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| Q |
325 |
atagaa |
330 |
Q |
| |
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|||||| |
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|
| T |
1833576 |
atagaa |
1833581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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