View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_low_26 (Length: 278)
Name: NF8246_low_26
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 37013281 - 37013487
Alignment:
| Q |
1 |
aacatacacgggcaagagagttgtctatataatatgaatatgaataacgttttctatacatggacagaccagaaaaagaaaataaattataaattaatgc |
100 |
Q |
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| T |
37013281 |
aacatacacgggcaagagagttgtctatataatatgaatatgaataacgttttctatacatggacagaccagaaaaagaaaataaattataaattaatgc |
37013380 |
T |
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| Q |
101 |
aaattgcatcaaaaggatccttacaaattggatgggtaggtaattatctttggacaacagctcttatctcactctcaccataacagttcacttgtgcatt |
200 |
Q |
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| T |
37013381 |
aaattgcatcaaaaggatccttacaaattggatgggtaggtaattatctttggacaacagctcttatctcactctcaccataacagttcacttgtgcatt |
37013480 |
T |
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| Q |
201 |
gctacac |
207 |
Q |
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| T |
37013481 |
gctacac |
37013487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 37020115 - 37020155
Alignment:
| Q |
199 |
ttgctacactttaagatacttcc--tatcctagtagaataa |
237 |
Q |
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| T |
37020115 |
ttgctacactttaagatacttcctatatcctagtagaataa |
37020155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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