View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_low_27 (Length: 277)
Name: NF8246_low_27
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 28883236 - 28883476
Alignment:
| Q |
18 |
aaatacagtccttagttttgtacaatggctccatatgatatttttccattgtcaagcaaagaaatattatgtatcattgattttccatttgcaaaataca |
117 |
Q |
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| T |
28883236 |
aaatacagtccttagttttgtacaatggctccatatgatatttttccattgtcaagcaaagaaatattatgtatcattgattttccatttgcaaaataca |
28883335 |
T |
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| Q |
118 |
atccttagttttgtacaatgcgctctgtaataatcagtatgtaacaaaccatgctaccatacacccaaatacctatcttactataggttgatgtgtgtcg |
217 |
Q |
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| T |
28883336 |
atccttagttttgtacaatgcgctctgtaataatcagtatgtaacaaaccatgctaccatacacccaaatacctatcttactataggttgatgtgtgtcg |
28883435 |
T |
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| Q |
218 |
gcgaactagtcttgtatagtcacaagaccaaatttatagta |
258 |
Q |
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| T |
28883436 |
gcgaactagtcttgtatggtcacaagaccaaatttatagta |
28883476 |
T |
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