View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_low_28 (Length: 277)
Name: NF8246_low_28
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 47476552 - 47476277
Alignment:
| Q |
1 |
attttagtagttgaattgaaagtgtgtttctcttgcttgccatagaattactattaagacatgccaattatgcaatagcattgatcaaatcttaatcatg |
100 |
Q |
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| T |
47476552 |
attttagtagttgaattgaaagtgtgtttctcttgcttgccatagaattactattaagacatgccaattatgcaatagcattgatcaaatcttaatcatg |
47476453 |
T |
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| Q |
101 |
aattaaatattgattgctttgttgtcttattttgtaaacaaacaaatgcttgcttttttaaacttgagtaatgatacaggggatatcatctttatctgtt |
200 |
Q |
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| T |
47476452 |
aattaaatattgattgctttgttgtcttattttgtaaacaaacaaatgcttgcttttttaaacttgagtaatgatacaggggatatcatccttatctgtt |
47476353 |
T |
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| Q |
201 |
ttttctcac-------------aaagtcttctataaaattaaggacctttcctttttaaaaaatttatgttgtttt |
263 |
Q |
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| T |
47476352 |
ttttctcacatgaatgatgtttaaagtcttctataaaattaaggacctttcctttttaaaaaatttatgttgtttt |
47476277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 44 - 263
Target Start/End: Complemental strand, 24802612 - 24802380
Alignment:
| Q |
44 |
agaattactattaagacatgccaattatgcaatagcattgatcaaatcttaatcatgaattaaatattgattgctttgttgtcttattttgtaaacaaac |
143 |
Q |
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| T |
24802612 |
agaattactattaagacatgccaattatgcaatagcattgatcaaatcttaatcatgaattaaatattgattgctttgttgtcttattttgtaaacaaac |
24802513 |
T |
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| Q |
144 |
aaatgcttgcttttttaaacttgagtaatgatacaggggatatcatctttatctgttttttctcac-------------aaagtcttctataaaattaag |
230 |
Q |
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| T |
24802512 |
aaatgcttgcttttttaaacttgagtaatgatacaggggatatcatccttatctgttttttctcacatgaatgatgtttaaagtcttctataaaattaag |
24802413 |
T |
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| Q |
231 |
gacctttcctttttaaaaaatttatgttgtttt |
263 |
Q |
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| T |
24802412 |
gacctttcctttttaaaaaatttatgttgtttt |
24802380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 47473219 - 47473095
Alignment:
| Q |
80 |
attgatcaaatcttaatcatgaattaaatattgattgctttgttgtcttattttgtaaacaaacaaatgcttgcttttttaaacttgagtaatgatacag |
179 |
Q |
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| T |
47473219 |
attgatcaaatcttaatcatgtattaaatattggttggtttgttgtcttattttgtaaacaaacaaatgcatgcttttttaaactagagtaatgatacag |
47473120 |
T |
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| Q |
180 |
gggatatcatctttatctgtttttt |
204 |
Q |
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| T |
47473119 |
ggaatatcatccttatctgtttttt |
47473095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 47485980 - 47485908
Alignment:
| Q |
66 |
aattatgcaatagcattgatcaaatcttaatcatgaattaaatattgattgctttgttgtcttattttgtaaa |
138 |
Q |
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| T |
47485980 |
aattatgtaatagcattgatcaaatcttaatcatgaattaaatattggttgctctgttggcgtattttgtaaa |
47485908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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