View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_low_33 (Length: 241)
Name: NF8246_low_33
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 19057397 - 19057188
Alignment:
| Q |
18 |
atttgtttctaccattgtgagcagagactacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacatac |
117 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057397 |
atttgtttctaccattgtgagcagagaatacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacatac |
19057298 |
T |
|
| Q |
118 |
cactttcgacacaaatctcaatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgcca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057297 |
cactttcgacacaaatctcaatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgcca |
19057198 |
T |
|
| Q |
218 |
ttagaataat |
227 |
Q |
| |
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||| |||||| |
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| T |
19057197 |
ttaaaataat |
19057188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 50804791 - 50805000
Alignment:
| Q |
18 |
atttgtttctaccattgtgagcagagactacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacatac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804791 |
atttgtttctaccattgtgagcagagactacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacatac |
50804890 |
T |
|
| Q |
118 |
cactttcgacacaaatctcaatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgcca |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804891 |
cactttcaacacaaatctcaatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgcca |
50804990 |
T |
|
| Q |
218 |
ttagaataat |
227 |
Q |
| |
|
||| |||||| |
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|
| T |
50804991 |
ttaaaataat |
50805000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 50871086 - 50870877
Alignment:
| Q |
18 |
atttgtttctaccattgtgagcagagactacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacatac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871086 |
atttgtttctaccattgtgagcagagactacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacatac |
50870987 |
T |
|
| Q |
118 |
cactttcgacacaaatctcaatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgcca |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50870986 |
cactttcaacacaaatctcaatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgcca |
50870887 |
T |
|
| Q |
218 |
ttagaataat |
227 |
Q |
| |
|
||| |||||| |
|
|
| T |
50870886 |
ttaaaataat |
50870877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 42349049 - 42348931
Alignment:
| Q |
105 |
gaagagtacataccactttcgacacaaatctcaatttcatt---------cccctgaagagcagccctgaaatctccttccagaagtggtaacaaaacca |
195 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||| |
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| T |
42349049 |
gaagagtgcataccactttcgacacaaatctcaatttcattttgatcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccg |
42348950 |
T |
|
| Q |
196 |
cgtaggtagaaccatcttg |
214 |
Q |
| |
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||||||||||||||||||| |
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| T |
42348949 |
cgtaggtagaaccatcttg |
42348931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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