View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8246_low_35 (Length: 227)

Name: NF8246_low_35
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8246_low_35
NF8246_low_35
[»] chr2 (2 HSPs)
chr2 (140-208)||(41350530-41350598)
chr2 (18-75)||(41350669-41350726)
[»] chr4 (1 HSPs)
chr4 (140-214)||(23712791-23712865)


Alignment Details
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 41350598 - 41350530
Alignment:
Q  140 cagccacatgactagattgagcagaagaaagaatagctttaaggcaagaaaaatggccataataagcag 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41350598 cagccacatgactagattgagcagaagaaagaatagctttaaggcaagaaaaatggccataataagcag 41350530  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 41350726 - 41350669
Alignment:
Q  18 cgaacaaatcccctacaaccaattcaagaacatttaaaaaaccataacaacatagcat 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41350726 cgaacaaatcccctacaaccaattcaagaacatttaaaaaaccataacaacatagcat 41350669  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 23712865 - 23712791
Alignment:
Q  140 cagccacatgactagattgagcagaagaaagaatagctttaaggcaagaaaaatggccataataagcagaataat 214  Q
    |||||||| |||||||| |||||| |||||| || || |||||||||||| |||| ||||| ||||||| |||||    
T  23712865 cagccacaggactagatcgagcagcagaaagtattgccttaaggcaagaagaatgaccatagtaagcagcataat 23712791  T

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