View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8246_low_36 (Length: 227)
Name: NF8246_low_36
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_low_36 |
 | |
|
| [»] chr4 (7 HSPs) |
| |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 7637918 - 7637692
Alignment:
| Q |
1 |
tgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgctttatccgaagtaagaagctatgaaggcacatcaaaaccattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7637918 |
tgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgctttatccgaagtaagaagctatgaaggcacatcaaaaccattg |
7637819 |
T |
|
| Q |
101 |
ttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7637818 |
ttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaatt |
7637719 |
T |
|
| Q |
201 |
cctgggctgaaatctcacgtagttgtt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
7637718 |
cctgggctgaaatctcacgtagttgtt |
7637692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 7616083 - 7615857
Alignment:
| Q |
1 |
tgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgctttatccgaagtaagaagctatgaaggcacatcaaaaccattg |
100 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||||||||||||| ||| || |||||| ||| || |||||| |||||||| |||||||| ||| |
|
|
| T |
7616083 |
tgttgctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgttg |
7615984 |
T |
|
| Q |
101 |
ttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
7615983 |
ttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaatt |
7615884 |
T |
|
| Q |
201 |
cctgggctgaaatctcacgtagttgtt |
227 |
Q |
| |
|
| ||||||||||| ||||||||||||| |
|
|
| T |
7615883 |
catgggctgaaatatcacgtagttgtt |
7615857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 7629472 - 7629246
Alignment:
| Q |
1 |
tgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgc-tttatccgaagtaagaagctatgaaggcacatcaaaaccatt |
99 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |||||| |||| | ||||||| ||||| || ||| |||||| |||||||| ||||||||||| |
|
|
| T |
7629472 |
tgttgctgacatcctagaaccggtctacgtacctcaaattgtcgattcactatttgcctttataggagataa-aagctacgaaggcacgtcaaaaccatt |
7629374 |
T |
|
| Q |
100 |
gttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaat |
199 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| | || ||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7629373 |
gttggctgttcaagtaacggagctagttgacggtgtctttattggttgcacattcaaccatgttgttgttgacggaaagtccgtgtggcatttcatcaat |
7629274 |
T |
|
| Q |
200 |
tcctgggctgaaatctcacgtagttgtt |
227 |
Q |
| |
|
|| ||||||||||||||||||||||||| |
|
|
| T |
7629273 |
tcatgggctgaaatctcacgtagttgtt |
7629246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 7607087 - 7606869
Alignment:
| Q |
1 |
tgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgcttt-atccgaagtaagaagctatgaaggcacatcaaaaccatt |
99 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||||| |||||| |||| ||| ||||| || ||| || ||| || |||||||||||| ||||||||||| |
|
|
| T |
7607087 |
tgttgctgacatcctggaaccggtctacgtacctctaattgtcgattcattttttgccttcatcggagataaaaa-ctatgaaggcacgtcaaaaccatt |
7606989 |
T |
|
| Q |
100 |
gttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaat |
199 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606988 |
gttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaat |
7606889 |
T |
|
| Q |
200 |
tcctgggctgaaatctcacg |
219 |
Q |
| |
|
|| ||||||||||| ||||| |
|
|
| T |
7606888 |
tcatgggctgaaatatcacg |
7606869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 71 - 226
Target Start/End: Original strand, 7655478 - 7655633
Alignment:
| Q |
71 |
agaagctatgaaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcattt-aaccatgttgtcgtt |
169 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| || |||||||| | | |||| |||||||| || | | |
|
|
| T |
7655478 |
agaaactacgaaggcacatcaaaaccattgttggctgttcaagtcacggagctagttgacggcatcttcattggct-ttaatttcaaccatgtcgtagct |
7655576 |
T |
|
| Q |
170 |
gacggaaagtccgtgtggcatttcatcaattcctgggctgaaatctcacgtagttgt |
226 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| ||||||||||| |||||| ||||| |
|
|
| T |
7655577 |
gacggacagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgt |
7655633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 66 - 213
Target Start/End: Complemental strand, 39098453 - 39098306
Alignment:
| Q |
66 |
aagtaagaagctatgaaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgt |
165 |
Q |
| |
|
|||||| || ||| ||||||||||||||||||||| | ||||||||||| || ||||| ||||| |||||||||||||| | |||| | || |||||||| |
|
|
| T |
39098453 |
aagtaaaaaactacgaaggcacatcaaaaccattgcttgcagttcaagttactgagcttgttgatggtattttcattggcttctcaatcaatcatgttgt |
39098354 |
T |
|
| Q |
166 |
cgttgacggaaagtccgtgtggcatttcatcaattcctgggctgaaat |
213 |
Q |
| |
|
|| || || ||||| | ||||||||||||||||| ||| ||||||| |
|
|
| T |
39098353 |
tgtcgatggtaagtcgttttggcatttcatcaattcatggtctgaaat |
39098306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 218
Target Start/End: Complemental strand, 39076010 - 39075873
Alignment:
| Q |
81 |
aaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtc |
180 |
Q |
| |
|
||||||||||| ||||||| | ||||| |||||||| ||| || | || ||||| |||||||||| || |||||||||| | || |||| ||||| |
|
|
| T |
39076010 |
aaggcacatcacaaccattacttgcagtacaagtaacagagttaatcgatggtatcttcattggttttgcaattaaccatgtgggtgtagacgccaagtc |
39075911 |
T |
|
| Q |
181 |
cgtgtggcatttcatcaattcctgggctgaaatctcac |
218 |
Q |
| |
|
| |||||||||||||| || |||||||||||||||| |
|
|
| T |
39075910 |
attttggcatttcatcaactcttgggctgaaatctcac |
39075873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 8934428 - 8934654
Alignment:
| Q |
1 |
tgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgctttatccgaagtaagaagctatgaaggcacatcaaaaccattg |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||| ||| ||||||||| ||| || |||||||| ||||||||||||||||||||| |
|
|
| T |
8934428 |
tgttgctgacattctagaacccacctacgtacctccaattgttgattcattttttgctttaaccggtgttagaagctacgaaggcacatcaaaaccattg |
8934527 |
T |
|
| Q |
101 |
ttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaatt |
200 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| | |||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
8934528 |
ttggcagttcaagtaacggagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgacggaaagtctgtgtggcatttcatcaatt |
8934627 |
T |
|
| Q |
201 |
cctgggctgaaatctcacgtagttgtt |
227 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
8934628 |
catgggctgaaatctcacgtagttgtt |
8934654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 8935369 - 8935595
Alignment:
| Q |
1 |
tgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgctttatccgaagtaagaagctatgaaggcacatcaaaaccattg |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| ||||||||||||| ||| ||||||||| |||| || |||||||| ||||||||||||||||||||| |
|
|
| T |
8935369 |
tgttgctgacattctagaacccacctacgtaccaccaattgttgattcattttttgctttaaccgatgttagaagctacgaaggcacatcaaaaccattg |
8935468 |
T |
|
| Q |
101 |
ttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaatt |
200 |
Q |
| |
|
||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| | |||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
8935469 |
ttggcagttcaagtaactgagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgacggaaagtctgtgtggcatttcatcaatt |
8935568 |
T |
|
| Q |
201 |
cctgggctgaaatctcacgtagttgtt |
227 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
8935569 |
cttgggctgaaatctcacgtagttgtt |
8935595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 8929973 - 8930199
Alignment:
| Q |
1 |
tgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgctttatccgaagtaagaagctatgaaggcacatcaaaaccattg |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||| ||| ||||||||| ||| || |||||||| |||| |||||||||||||||| |
|
|
| T |
8929973 |
tgttgctgacattctagaacccacctacgtacctccaattgttgattcattttttgctttaaccggtgttagaagctacgaagtcacatcaaaaccattg |
8930072 |
T |
|
| Q |
101 |
ttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaatt |
200 |
Q |
| |
|
|||||| |||||||||| ||| || |||||||||||||||||||||||||||||||||| | |||| |||| |||||||| ||||| ||||||||||||| |
|
|
| T |
8930073 |
ttggcatttcaagtaactgagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgatggaaagtctgtgtgacatttcatcaatt |
8930172 |
T |
|
| Q |
201 |
cctgggctgaaatctcacgtagttgtt |
227 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
8930173 |
catgggctgaaatctcacgtagttgtt |
8930199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 92 - 227
Target Start/End: Original strand, 8910525 - 8910660
Alignment:
| Q |
92 |
aaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatt |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8910525 |
aaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatt |
8910624 |
T |
|
| Q |
192 |
tcatcaattcctgggctgaaatctcacgtagttgtt |
227 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8910625 |
tcattaattcctgggctgaaatctcacgtagttgtt |
8910660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 227
Target Start/End: Complemental strand, 6501288 - 6501132
Alignment:
| Q |
71 |
agaagctatgaaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttg |
170 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||| | ||||| ||||| || ||| |||||| |||| | || ||||| | ||| |||||||| ||| || |
|
|
| T |
6501288 |
agaaactacgaaggcatatcaaaaccattgcttgcagtgcaagtgacagagttagttggcggtgtctttattgggtttagattcaaccatgtggtcactg |
6501189 |
T |
|
| Q |
171 |
acggaaagtccgtgtggcatttcatcaattcctgggctgaaatctcacgtagttgtt |
227 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||||||||||| |||||| |||||| |
|
|
| T |
6501188 |
gtggaaagtccatgtggcattttatcagttcctgggctgaaatttcacgtggttgtt |
6501132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 220
Target Start/End: Complemental strand, 8103248 - 8103108
Alignment:
| Q |
80 |
gaaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagt |
179 |
Q |
| |
|
|||||||||||| |||||||||| || || ||||| || ||| |||||||||| || || ||||||| | ||||||||||| || ||||| |||| | |
|
|
| T |
8103248 |
gaaggcacatcacaaccattgtttgccgtgcaagtgacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatggaactt |
8103149 |
T |
|
| Q |
180 |
ccgtgtggcatttcatcaattcctgggctgaaatctcacgt |
220 |
Q |
| |
|
| | ||| ||||||| ||||| |||||||||||||||||| |
|
|
| T |
8103148 |
cggcatggtatttcattaattcgtgggctgaaatctcacgt |
8103108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 40146736 - 40146883
Alignment:
| Q |
80 |
gaaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagt |
179 |
Q |
| |
|
|||||||||||| |||||||||| || || ||||| || ||| |||||||||| | |||||||||| |||||||||||| || ||||||||| ||| |
|
|
| T |
40146736 |
gaaggcacatcacaaccattgttagctgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagt |
40146835 |
T |
|
| Q |
180 |
ccgtgtggcatttcatcaattcctgggctgaaatctcacgtagttgtt |
227 |
Q |
| |
|
|| |||| |||||| ||||| ||||| ||||||| ||| |||||| |
|
|
| T |
40146836 |
ccacatggcttttcattaattcatgggcgaaaatctcgcgtggttgtt |
40146883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 34174889 - 34174825
Alignment:
| Q |
81 |
aaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggt |
145 |
Q |
| |
|
|||| |||||| |||||||| | |||||||||||||| ||| || |||| ||||| ||||||||| |
|
|
| T |
34174889 |
aaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttcattggt |
34174825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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